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GT18501

CSHL Arabidopsis genetrap mutant lines

Original: GT18501

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18501

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1682902 [Map]; Strand: c
      • AT1G05630.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G05630.2 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18501 - 3-prime edge 
    TTTTCATCCC TATACACACA TTCTATCTGA CCGGATCGTA TCGGTATATC 
    AATTCTCACT CGACCAAGAG GGAGACGCAG ACTGGGAGAT TCTTGAGGAA 
    CATTGCTTGT ACGGAGACGC AGCTTTGGGC TGGTCAAGAG AATGGTATCA 
    GGTTTTGGAA TTTGGAAGAT GCGTATGAGG CTGGGTGTGG GATTGGTGGC 
    CAGGTCCCGC GAGGGGATGA GGATACGGCG CCGTTTCATG AGTCTGTTAC 
    TACTTCTCCA ACAATGTGTT TGGTGGCTGA CCAAAGCAAC AAGCTTTTGT 
    GGAGTGGTCA CAAGGATGGC AAAATCCGGG CTTGGAAGAT GGATCAGAGC 
    TCTGTTTCTC ATGATGATGA TGATTCTGAT CCTTTCAAGG AGCGTGTCTC 
    CTGGCTAGCT CATCGTGGTC CTGTCAATTC CATTGTCATT AGCTCTTATG 
    GTTAGTTGTT TTTGCTTTAG ACTATGATTG ATTGATCTGA AAAATATGTT 
    CTTTCTCTAA TCTTGCTTAT GCTTGTGGTT GTGATGTAGG TGATATGTGG 
    TCATGTTCTG AAGGAGGTGT TATAAAAATA TGGCCTTGGG ATACGTTAGA 
    GAAATCTCTG CTGCTTAAAC CGGAGGAAGA ACACATGGCT GCTCTATTAG 
    TGGAGAGATC TGCCATTGAC CTAAGGAGCC AAGTTACTGT AAATGGGACA 
    TGTAGCATAT CTTCCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1682762 [Map]; Strand: c
      • AT1G05630.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G05630.2 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18501 - 5-prime edge 
    GCCACCAGCG CCGATAAATT CAGGTAATGG CTCGGTGTCG TCATCCCCAA 
    GACCGACATT GGGAGGAGGA TTAACGATGG TGTACTCCTC AGCTCCGGCG 
    TTGGTTTCAT CAGCGGCGTT TTCTGTGATG TTACCTCCGG TGGAGAATTC 
    GTCGTCGGAG GAATCGAAAT AAACGGCTTC GGATGCTAAT GTAGCGGATC 
    TAGGAACCTC GTCCACGCTG TGTTTGCGGA TCTGATGGTG AGGCTTGTGA 
    TCGAATTGTA GGCTATAGGA ATGCGTTTTA CGCCGCGCAG GAACAGGGAC 
    GAGCGTGGCC AACGCCTCTT CGTCTTCTTC TTCGATAATT AGCGAATCCA 
    TCGACGATCA GAGGAATGCA AGAACGAGAG AATATGGGAA TGGGGACGAA 
    TGGTGAAGAA CAGAAAAGGG AGACTGAGAG AGAATGATCA TGAGAGGAGA 
    GCACGTCGTG GTGGTGGGAG GGAGAGAGA

AT1G05630.1

Model type
Protein coding
Short Description
Endonuclease/exonuclease/phosphatase family protein
Curator Summary
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light
Computational Description
5PTASE13; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 2865 Blast hits to 2115 proteins in 235 species: Archae - 0; Bacteria - 18; Metazoa - 1064; Fungi - 695; Plants - 755; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05630.2

Model type
Protein coding
Short Description
Endonuclease/exonuclease/phosphatase family protein
Curator Summary
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light
Computational Description
5PTASE13; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR