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GT18544

CSHL Arabidopsis genetrap mutant lines

Original: GT18544

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18544

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22595361 [Map]; Strand: c
      • AT5G55830.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18544 - 3-prime edge 
    TACCGACCGT TTTCATCCCT ACCTCTTTTA TCGGTTAACA TCGATCTTTC 
    TCCGTTCTTG AACGGTGAAA TGTATGTAGG ATTCTCAGGT TCAACAGAAG 
    GAAGCACAGA GATTCATCTG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22693677 [Map]; Strand: w
      • AT5G56030.2 - [+] show detail - heat shock protein 81-2
        Distance: 4206; Region: intergenic
      • AT5G56040.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -1201; Region: intergenic
    Flanking Genome Sequence: GT18544 - 5-prime edge 
    TTTTTAAGTG AATTTACGGT AATTAGAGTA CACACTATTC CATAATTAAA 
    TACCTGCAGA ATAAAACCAT GTTGTCGAAA TGCTTTCTCT CACTTTACTA 
    TGTGTATAGA TATGCACATG CATAACCATC TCTCTACATA TCTATTGATA 
    CATATTTAAT CTTTTGATTC TACTATGGCA TGTGACTTGA GGTGTGGTGT 
    TATATCTTTA TATATAATCT TCTTGACCTA ATGATGCTTG ACCCATGATC 
    TTAATTTTAG TTTACTTTAT CTTTTCCATA ATCTTTTTGT TTTGTCCAGT 
    TCCTCCTTTT TAATTTTTCT AATCAGTATT CTAAATTTCC AGTCCAAGAA 
    ATTGGATCTA AAACAGCTTC ATCTTAATTC AATATATGTA TGAGCAAGTG 
    TATATATGTA TATGGATATT AATTAGTATT AGCATACGTA TGATATAAAC 
    AGATAATTAC AGCGAATGAA ATGGACCGAC AATGCTAGCA GAGATGAGCA 
    TTAGTAAATT TAATTAATCT TTCACATAAA TTCCTAGCTT TCATGTGCAT 
    TTCACACTCT TCAAGATTCC ATGTTTCAAC TACTAATTTA ATAATTTATA 
    TATC

AT5G55830.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G53380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56030.2

Model type
Protein coding
Short Description
heat shock protein 81-2
Curator Summary
A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c.
Computational Description
heat shock protein 81-2 (HSP81-2); CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 81.4 (TAIR:AT5G56000.1).
Link
InterPro Scan - TAIR

AT5G56040.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR