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GT18580

CSHL Arabidopsis genetrap mutant lines

Original: GT18580

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18580

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9307718 [Map]; Strand: c
      • AT1G26860.1 - [+] show detail - transposable element gene
        Distance: -1918; Region: intergenic
      • AT1G26870.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -5138; Region: intergenic
    Flanking Genome Sequence: GT18580 - 5-prime edge 
    ACGTGTTAAT ATCTTGGACC TAGAAGGTGT GTGAGTTTTC AAGACCTATA 
    TTGGGCCTTG ACTTGGTTAA TCAGCAATAT GGGCCAATCA ATAAATATTA 
    TTGACGACTT GACATCGTTT TTATTTTTGG TAATTTCTCA AAGCTGCTTT 
    AGTGCTTTCT AAACGACAAC TTCATTGTTT ACACTTACAG TCTTCAAAGA 
    GTTACTACTT GGCCGACAAA AGAAATATGT TATTATTGTA CTTTTAAAAA 
    AAAAAATTAT CTTTGCTAAT AATTTGTAAA TGTAGGTCGG CCAACTAATT 
    ATGGAAATTA GTTTTCGCTT AGAGTCTGAC ATTTGAAAAT CTAGTACAAA 
    ACTTTTTTTT TAACAAAAAA CAAAATAAAG GGCTTCTATT ATTATTGCTC 
    ATAATCATTA GCCATCCATT GGTAAAAGTA AAACACGATG GGTGTGATGA 
    ATATTTCCTA ACCAATAGGC TATCCAAAAA CAAGAGAGCT TATAACATAT 
    CTTGATAACC TTGGCAAATA TGAAGTGAGT TTTGGTGAAA CTCAAAAGGT 
    TTAAAAGTAT ATGAATAGAT GTCGACAATT CTTTAACTTT CCGATATAAT 
    ATGAAATAGA AGGAGTAATA AAAACAAATT CTTCAGACAT TGTAAGCTTA 
    GACTAAACAA CTTTTTGTA

AT1G26860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR

AT1G26870.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
FEZ (FEZ); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 2973 Blast hits to 2966 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR