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GT18594

CSHL Arabidopsis genetrap mutant lines

Original: GT18594

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18594

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9201980 [Map]; Strand: c
      • AT4G16260.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -428; Region: promoter
    Flanking Genome Sequence: GT18594 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACTAAACAG 
    TGTCATTGAA TCAAGTATAA TTCCACTCAT GAATTGGTTA CCGATTTTTT 
    GACTTTATGA ATTATGATGG ACCAAGTTGG CTATTAGCTA ACGTAGTTTT 
    ATCATATTTG CTTACAAAAG AAAAAACTTT ATTTGAAGAT ATTGTCATCA 
    CTTAACAAGA GCAGCCTTAT AATTCGATAC GATGACGAAG TAAACACAGC 
    ATTATTAAAA TAATTTGGTT TAGAAGATTA GATTTATCAA CTTTTTATAA 
    TATCACACGT TATAGCAAAG TTATAGCAGC CGGCGGCTAG ACTCCACGTA 
    TACAAATTTT CAACACTATC ATGGTTTATG GACGAATTTT CAGATCGGCC 
    CCGCATAAAA CGACAAATTT ATAATTAGAC CCACATAAAA ACCAAAATGA 
    TCATAAAAGA CCCTGAAACA ATTCAAGAAA CCCGAGAACA GTCTCATAGT 
    ATTCATATTT TTACACAGAA AACTCCAAAT TGAATTGTAT AAAACTCATA 
    AAGCGGAACA CAAATACACG TTACATTTGA AAAATGTAGT CTTCTATCAA 
    TCTATTCTCT CCAACGGTGA CTACAGTTCG GGTTGCA

AT4G16260.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR