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GT18636

CSHL Arabidopsis genetrap mutant lines

Original: GT18636

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18636

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24574152 [Map]; Strand: c
      • AT5G61070.1 - [+] show detail - histone deacetylase of the RPD3/HDA1 superfamily 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18636 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTTACAGCTC 
    GGTGATGTTC GCGTGTGCAG ATGGTCTCCT CATACAAAAA ACCCACCTTT 
    CGCTGGCTTT TACCGGCGAC TTTGCGGTCA CCCTCTCCGC ATTTCTTGCC 
    GGAAGATTCG CTGGTCATTG TCATATCCGG GAGATGTGAC AGTCTTATCT 
    TTCGAAGAAC AGTGAGAGAA ACTGAAGGGT CAACTAGTCT CAACTCTGAA 
    GAAGCTTCAA ACTTCAAAAG CATTTTTCTT TTCAAAATAT ATTTTTCTTT 
    ATCTTATTTA CGATTAAATA TATATTTGTT GGACCATTAA AGAGCTTCTT 
    TGGAGGGAAA ATGAAAAACC TAGCATCTCA ACCAATCAAA GTCGGACACC 
    TCAAACTCAT TTAGAACCAA TGACCGCATA AACCAATTTA AAATTGGTGA 
    ACCGAATTTT CTGCAAACGG CGAATTTATC GTTTAATAGT AATTTTTTTT 
    TTTTCTTTTT TTTTGGAAAT GGTAAAAACG GGCCCAAACC AAAAGATGAA 
    AGGGGCCCCC CCTGATTCGG GGGGGAAAAT CCCCGGTTTT TTCGATTCTC 
    CCCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24574075 [Map]; Strand: c
      • AT5G61070.1 - [+] show detail - histone deacetylase of the RPD3/HDA1 superfamily 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18636 - 5-prime edge 
    GTAGGATGGG AAATCCCGTA CCGACCGTTA TCGTAATTAT CTGGGAGAAG 
    CTTCAGCTCG CCGGAGTCAC TCAAAGGTTC ATACTTTCCT CTTCTCGTGC 
    GCCTTTGTTG TCTTTTTTGG GCGATAAAGC CCTAGAAAAG GCTGAAATTT 
    TAGGCTAATT GGGTGTTTTG ATGATTATCT CCGCTGAGAA AACAGGTCTC 
    GTTTTGTTTT TCCTTATTTG ACTTGACGTT TGACTTTCTC AATCTGAATT 
    GTGTAATTCA TAGATTGGAA AGATTCTGCT GATTTTATCC TATATAGGTG 
    TTTCCTAGCT TGGTTAACTG TTTCTTTATC CTATATAGGT GTTTCCTAGC 
    TTGGTTAACT GTTTCGTTAT CCTATATAGG TGTTTCATAA ATTGTTAACA 
    ATGTTGGTCT TTCCTTTTTT GCAGATGTGT GGTTCTTGGT GGTAGTAAAG 
    CTGAAGATAA GCATCTCAAA TTGGTTCACA CAAAGAAACA TGTTAATTTA 
    GTGAAGAGTA TTAGCACAAA AAAGAAAGAT TCTCGGAGAA ACAAGATTGC 
    TTCACAGTTG GATTCGATTT ATCTGAATGG AGGTTCATCT GAAGCTGCAT 
    ATCTTGCAGC TGGATCTGTT GTAAAGGTAA TATTAGATTC ATACAAATTG 
    TCTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24573991 [Map]; Strand: c
      • AT5G61070.1 - [+] show detail - histone deacetylase of the RPD3/HDA1 superfamily 18
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18636 - 5-prime edge 
    TTTCCTCTTC TCGTGCGCCT TTGTTGTCTT TTTTGGGCGA TAAAGCCCTA 
    GAAAAGGCTG AAATTTTAGG CTAATTGGGG GTTTTGATGA TTATCTCCGC 
    TGAGAAAACG GGCTCGTTTT GTTTTTCCTT ATATGACTTG ACGTGGGACT 
    TTCTCAATCT GAATTGGGTA ATTCATAGAT CGGAAAGATT CTGCTGATTT 
    TATCCTATAT AGGGGTTTC

AT5G61070.1

Model type
Protein coding
Short Description
histone deacetylase of the RPD3/HDA1 superfamily 18
Curator Summary
Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.
Computational Description
histone deacetylase of the RPD3/HDA1 superfamily 18 (HDA18); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR