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GT18655

CSHL Arabidopsis genetrap mutant lines

Original: GT18655

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18655

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22764339 [Map]; Strand: c
      • AT1G61660.4 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -8039; Region: intergenic
      • AT1G61667.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -3324; Region: intergenic
    Flanking Genome Sequence: GT18655 - 3-prime edge 
    GGCCCCGAGT CATCTATATC AATCGTCATG ATCATCGCAT TCATCTCTCT 
    CGACGATTCA AATAAGGTTG AAATCTTCAC ATTCAGTTTC AAATTTGATC 
    AAATTCATAT TGAATTATAC ATGTGTATCC AATGAATTTT TATTGGGTTC 
    CACTCAAATT ACTAGAACAT CTTGCTTCAC TTGTCTTGAC TTGATAATGC 
    TCTTTGAGAT TCTTGAATCT TAAGCCTGTT TTTTTTTAAA AAAGAACATA 
    TTTGAATCTG TGTTAGCTGA TATAGAATAA GAGTAAGAAA CTCGAAATAC 
    CAGATTAAGA AGTATGAGAG ACAAAAATAG ATGGTCTGCC TCCTGAACAA 
    AGAAGACAAA GACAAGAACC GGCTGCTTCT GATTCACCTT GAACGATAGA 
    AAGATTACAA AGGTTCGTAG GAAAGATATA TATTATCTAT TGGTTAGTTG 
    CTAATTTGCT ATAAGCTCTT AGTGTTTTTC TTGTAAAATC ATCTATAGTA 
    TCATAAAACC TTCTTGAACA ACATCGACGT TTTGAACTGC AAACGTTAAA 
    GATTGTTAAA GGTCCAATGC AAGGCTTGCA TGCAACTGCC TGGGGCAAAC 
    ATTTTTCTAC TTTTGA

AT1G61660.4

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1).
Link
InterPro Scan - TAIR

AT1G61667.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G54530.1); Has 441 Blast hits to 441 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR