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GT18673

CSHL Arabidopsis genetrap mutant lines

Original: GT18673

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18673

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18354381 [Map]; Strand: c
      • AT3G49500.1 - [+] show detail - RNA-dependent RNA polymerase 6
        Distance: -757; Region: promoter
      • AT3G49510.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18673 - 5-prime edge 
    CAACCCTCCA TGAATTAGAG CTAAAATCGT ATACATGGAT GTGAGTTCTT 
    CGACTGCTTT CGTTGCTCTC TTCATCATAG AGAAACCTCA AGATTTTGTG 
    GTTACGAGTT GTTGTCGTAT CCAAGAGCAA ACCCGTCATA TCTGTGGAAT 
    GTGTTTCTTG GTCGAATCCA TTTTTTTTGC CCCAAATACG GGTTCCGCAC 
    AAAGACACTC GAGTTCTCTT TG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18354014 [Map]; Strand: w
      • AT3G49500.1 - [+] show detail - RNA-dependent RNA polymerase 6
        Distance: -390; Region: promoter
      • AT3G49510.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18673 - 5-prime edge 
    GGGTTCCATT TACATCTCTA ATCTCAGTGC GATCTACTTG TTTTTGTGCA 
    ATGCTTTATC GAAAAATCAG ATCTTTGGTA GAAAAACAGC AGCAAGGAAT 
    CAGTTTCTAG AGTTCATGAT TCTAGATTCT AGAGTTTGTT CCTTGAGATT 
    AGATCTTCAA GGAATCCGCA ACGAAGACAA AGAAGACTCC GTTGATCCCT 
    CTATGACGCT CATAAGTATA CCTAGCAATG ATGATCAAGT

AT3G49500.1

Model type
Protein coding
Short Description
RNA-dependent RNA polymerase 6
Curator Summary
Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.
Computational Description
RNA-dependent RNA polymerase 6 (RDR6); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 633 Blast hits to 609 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 284; Plants - 204; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49510.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G49520.1); Has 2110 Blast hits to 1239 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2108; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR