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GT18699

CSHL Arabidopsis genetrap mutant lines

Original: GT18699

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18699

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1334077 [Map]; Strand: w
      • AT2G04039.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron3 (CDS)
      • AT2G04039.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron3 (CDS)
      • AT2G04039.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT18699 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGTACGT TTTCATCCCT 
    ATACACACAT TCTACCCGAC CGGATCGTAT CGGTATATGC ATCTCACTCG 
    ACCAATAAGC ATGGCGACAA AGCATTACAA GTTAGAAGCA GGAAACCTTA 
    TCGGCTTGGA TAGATACAAT CTATGTCAGA GATATCATCT TGAGATGCAA 
    GAATGGCTTG TACAAGGAGG AATCACGTCT TCTTCCATCA TTTGTCTCAG 
    CGGTTTCGCC ACTGCAGCCG CTTTCGCTGC GGGTTTAGGT TTCTTTGCCG 
    GAACCGCCAC TGTTGACTCT TCTTCTTCTT TGTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1334124 [Map]; Strand: w
      • AT2G04039.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron3 (CDS)
      • AT2G04039.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron3 (CDS)
      • AT2G04039.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT18699 - 5-prime edge 
    TCATCCTACT TTCTCCGTGC TCAAATGTCT TCTTGATTAT AACTTCTAAG 
    ACAATTATCA TTATTTGTGT CAGTTGGAAG GTTTTTTCTT AAAGAAAAGT 
    ATTCCATATT CCTTTTGGGC CTTTTTCCCT ACTGGAAACC TTACAGGTGA 
    AGTATTGAAT CTTTTACTTG AGACTCTTGT TACAGAAAAT TTCAATGGAA 
    CATTATGTCT TTTGGTTTGT TGCTTAAAAC AGGAGCAAAA GGATTTTCAA 
    TTTCCTCGCA CGGGTCAGGT CCGAGCACCG TGGAACCATT TCTTGTCGAC 
    GAGAGGAAAC CAACTGCGAA CCACGTTGTG TTTTGGGTCG AGAAGCGTCT 
    TGCTGCACAA GGGATCATCC CCGTTTGGAA CCAATGAGGT TTTTGTTCAC 
    TTGTAATTAT TACATTTGTA TACCCAAATT GAAGAAAACT TATAAATCCT 
    TGTCATAAAA TTGATTAAGA AAACAAATGA CCCTCTTTTA TAAACATCT

AT2G04039.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04039.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 157 Blast hits to 157 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04039.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR