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GT18739

CSHL Arabidopsis genetrap mutant lines

Original: GT18739

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18739

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 107071 [Map]; Strand: c
      • AT1G01250.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1741; Region: intergenic
      • AT1G01260.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1875; Region: intergenic
    Flanking Genome Sequence: GT18739 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
    GAGCTTTAAG TTTTGGTCGG TTCTTTTTTC CTTTTCGTGA GTTGTTGGTA 
    GATTAAAGTA GTCATCTTAT GATTTGTGTT TTTTTTGGTT GTTACCAAAA 
    AGGTGACGAT TTTGTTGACG TTAAACACGG AATTCATTGT AACATGAATA 
    TATCAACTAT AAACGCCAAA ATGGGATTTT CTTTTTTTTA TAAGGTAACA 
    AAATTAAGGA AAAACTATTG TTACAACTTC AACTTGCAAG TATGTTTCTG 
    AAGCTAGAGT TTACAGTCAC GTGTGAAAAT CAAACCAATT TGGATCATTA 
    TTGAAGATAA ATGAATACTT GATATATTGT TAGTACAAAT TTAAACAAAG 
    CGATAGGTTT AGTGGCATTC AGAATAAGTT CACCAAGAAC CGGCACTACT 
    TTATCCGGGA TTAAATCAAC TCTTACAATA GAGTTAACTG GACTAATAGG 
    CCGATTTGTT GTGGTAAAAC AAAACCAATG AAATATATGA TAAGATTGAG 
    ATTTAAGAAT TCAAGACTGA GTCCGTTGAA CAGCCCATTC TAATTCTGAT 
    TGCTAGATAA GGG

AT1G01250.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 5404 Blast hits to 5361 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5399; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01260.3

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1).
Link
InterPro Scan - TAIR