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GT18794

CSHL Arabidopsis genetrap mutant lines

Original: GT18794

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18794

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19306721 [Map]; Strand: c
      • AT2G46980.1 - [+] show detail - unknown protein; Has 1165 Blast hits to 947 proteins in 158 species: Archae -...
        Distance: -3262; Region: intergenic
      • AT2G46990.1 - [+] show detail - indole-3-acetic acid inducible 20
        Distance: -1134; Region: intergenic
    Flanking Genome Sequence: GT18794 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTTTTATT 
    AAGGTGAACC ATTCATTACT CATGCCCCCT CTCTTCCTTC GCTTTTTTTT 
    TTCTTTTCAA TTTCCAAATT TTCCCTATTA ATTTAGTTAT AATAACGTCT 
    AACAACTTCT CTTTCGCAAA TATATTACGT AGGATTTACA TCATTATATA 
    GGCCCTTTTT ACCGGTTGGG AATAGCCCGT TTTAAACCGA TTATGGCAGC 
    GCTGATACAA CTGGTTAAGA AGTGGACTAA TTTTTTTTTA GGCCTAAGCT 
    CCAAAAAAAC GTAATTGTAA AAAAACAAAA AGGAAATTTA TCTTCTTTTT 
    ACAGGAAAAA AAATCGGCCT AAAACTTACT TATGGGGGGT TTGGATTATC 
    CGCATCATCG GGGGGAACTA AATCGCATGG TTTTAGGGTA AAAAAGGACT 
    GGGACTTGAA TCACCGAAGG CTCAAACATT GGCCAGGCTG GCAAACATAG 
    GAGGGGCCCC CAACTCCCCA TCGAAACTTT CGCCAAAACT TTGGTTAACC 
    AGAAGTAAAG AACTTTCCCT AATTAACTTA AAAAAGAAGG GTTAACCCGA 
    TTACTAAGCA GGCTTTTCCC CAAACCCTTT CCAAAAATAA TTGGTTGGAT 
    TAAAGGGTAA ATGGTATCGG GGCCATATGA AAACACTTTA ATTTGGGAAA 
    GGGGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19306656 [Map]; Strand: c
      • AT2G46980.1 - [+] show detail - unknown protein; Has 1165 Blast hits to 947 proteins in 158 species: Archae -...
        Distance: -3197; Region: intergenic
      • AT2G46990.1 - [+] show detail - indole-3-acetic acid inducible 20
        Distance: -1199; Region: intergenic
    Flanking Genome Sequence: GT18794 - 5-prime edge 
    CTTTCTCCCT TAAGAGAGAC CTAATGAGAG TTCCTTTGTC TATGGAACTT 
    AAGGAGACGT CACATTTCTC ATATTTGCAA GCACGAGAAA AAGGAAACAC 
    ACACACTCAC GACACAACGA CCAACGACTA TATTCTTCTT CTCTCGACCA 
    AAGGNATTTT TGTTTCCACG TGGACTCCCT CAACCACAAC ATGTACATTG 
    TACAATGGAT GCGTGCCTTA TGGTAAAATT ATATAATTTC ATTGAAAATA 
    TAATATAAGA ATCAAATTTT AATGGATGTG TGCTTCGTGA CGAAACTAAT 
    TTCAT

AT2G46980.1

Model type
Protein coding
Computational Description
unknown protein; Has 1165 Blast hits to 947 proteins in 158 species: Archae - 0; Bacteria - 33; Metazoa - 631; Fungi - 90; Plants - 54; Viruses - 14; Other Eukaryotes - 343 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46990.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 20
Curator Summary
Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.
Computational Description
indole-3-acetic acid inducible 20 (IAA20); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 30 (TAIR:AT3G62100.1); Has 1768 Blast hits to 1768 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1767; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR