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GT18797

CSHL Arabidopsis genetrap mutant lines

Original: GT18797

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18797

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4272581 [Map]; Strand: w
      • AT5G13330.1 - [+] show detail - related to AP2 6l
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18797 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAATTAA 
    TAGTAAGTCT TTAGTTAGTG TGTAACTTAT TATAACAAAG TTACATCAAC
    TAGCTAAAAA CAATTAAGCT GTCATATGAT CAAGATATAA TTATTGTATT
    AGTTACCTTG GTCTGGTTGA TGTTGATCCG ATTTATCAAG CTCTTGTTTG
    ACCGGCGGGT CTGTCGGATT CTCTATGACA CGGCTGAGAG CGGAGACCAT
    GGCGGTGACA TCAGTCTCGT TCCAAGACGA ATTATCATCC GCCGCCGCCG
    ATGTTTCCGG TGGAACCGGT CCCTTTCCAT ACCTCCGATC CACTTTTACA
    ACAAAGTATG TACTCACACG TATATGTAAC ACACAAACAC ACCAAGAGAA
    TAATAGGTGT GTGTATATAT GTACAAGACT TTGAAAGGAA CTAAGTTTGA
    AACGAATTGA TGATGATAGG GAATCTGTGG AGTGACTAGG ACATGGAGCT
    TGGCTTGGTG ATGAACAACA AGTGGGGATC GCAAATAAGG GTTTTCTTGG
    GTTTAGGCTA TGATGTGATG TTATGAGGAA AGAAGAGGTG ACAAAAGGGT
    TTTATAAAGG AGAAGGATCT ACAAGAAAAA ATAGATGATA AAATATTAAT
    TAAAATCTTT GGAGTGGTGC GGGGTGGGAC CGTTCTTTGA GT

AT5G13330.1

Model type
Protein coding
Short Description
related to AP2 6l
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
related to AP2 6l (Rap2.6L); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR