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GT18837

CSHL Arabidopsis genetrap mutant lines

Original: GT18837

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18837

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 45080 [Map]; Strand: c
      • AT5G01110.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -705; Region: promoter
      • AT5G01120.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT18837 - 5-prime edge 
    CCTACTTTAT CCCTGTTTGA ATCGATAGAT CATGAATACC CAGAAAACGA 
    AAAAGGCGGG TTCTGTTTAT ATGTGCTAAA ATACGCAATG AACAGAAATC 
    TCAGAAGAAG ATAGACTAAT GTCGCAAAAC AAGATAGGGT TTTTTGGGTT 
    AGAGACAGAG GAAACTACAA AACCGATCGA TTTCTGGAGA AAATCCGACA 
    AGGGAAAACG AACAACATTC AACAAAACGA GAAAAATCGC TACGAAATAT 
    TGTACCTTTT CCCTCCCTCA TCCGACGAAA CTTGACAGTG AATTAGACAA 
    TTGAATCTCG ATACGACTTA GGGTTTGTAA ACAGTGAACG TCGAGGAAGA 
    GGAACAGTTG AGATAAGCGG GAAACTATAT ACAACGTTTT CTTCTTCTTT 
    TTTTAATTAA ATGCGATAAT TAAATATAGA AATGATTTAA CTTTAAACCA 
    TTAAACCATT AACACTACTT TAGTAGATTC GGTTTTTTCA TAACTTACAT 
    TTGTAGATTT TGTAGAATTT TCCATGCATC AAACATAGTA TTTTATAGGA 
    TTATGATTGC AATATTTAAT TTTGTATAAA TGTTTTGCAA AACAGTAAAC 
    ATCCCTACAC TATTCGATAT TATTATTAAG GCTTTTTCTG AAAACATGTA 
    ATTGGGCCAT CATGGTTCGA TTCTCAGCCC AATTAAAACC GGATCATTGA 
    GACTCACAAT AACGTCGTCG TTTAGCTCTG AGCTCTGAGC TCTTCTCTCA 
    ACTCCGACTC ATGGAGGATG AACAAACTAC TGTAAAAGTT TTCAAGTTTC 
    AATTTTTGTT CTCAATCGAA ATCAAATTGA GTCTCTCT

AT5G01110.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01120.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G43240.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR