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GT18848

CSHL Arabidopsis genetrap mutant lines

Original: GT18848

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18848

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16928327 [Map]; Strand: c
      • AT4G35720.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18848 - 3-prime edge 
    GTTTGTGGAG GAGCTAAGGA CGCAGCTTCC AGGATCAAGA AGATGTTGGC 
    GAGCTTCAGT CTGCTTTGAG AAGGAGCAAG AAAGGATATG AGTTAGGCCT 
    CGAGAGTGAC GTGGATGCTT ATGTGGCGTC TAGGAAAGAG ATCAAGCAGG 
    AGATCAAGAA GTATATGGTA ATGTCGAAAG AGACAGATGC GTCTTTGGAG 
    AGTGTTTGGT GTGATGGCGA TGATCAAGAG ATGAGTGCTT TAGTTAGAGT 
    GATGCAAGAG ACGAGTGTAA TGACTTGTTT CGTCTTACGC TCGGTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 416470 [Map]; Strand: c
      • AT5G02110.1 - [+] show detail - CYCLIN D7;1
        Distance: -552; Region: promoter
    Flanking Genome Sequence: GT18848 - 5-prime edge 
    CTTTCTCCCT GCTCGTAAGT CACGACCTTT TGCGTAATTA CCTCATCCAC 
    CCATGACAGC CAATAAATTA CTGAACTATA TTTTTTTTTA TATATCTTCG 
    CACCAACTTC CTACATATTT TTGTTACCAA ACCAAGAGAT TTTACTTTCG 
    ATGTTCTTGT GATTTCATTT TATCTTACTT CTGCTCCATT CCGTTTATCT 
    ATTGACAGAA AGAAAAAGAA AGAAAAAAAC AAACAAAGAA AAGAATCGCT 
    TGCTTGTTTT TATTAGTTGC TTAAGCCCCA AGAAACATCT CAGTTTCCTT 
    CTACTATAGT TTCTCCTTTA ACGACGTCGC TTCAATTCAT AAAATTGCTT 
    TCAAGACAAC TCAGAAAATC AGTAATCAGC TTAAAGCGTT ACAAAGAGAG 
    TAGATTATCA AAATATAGAC TCTTTTTTAT GGAAAATTAC AATGAAACTG 
    GTGATTAATA CCAAAAACAA ATGAAAGATC TAAGAAAGTA ACAACGCATT 
    ACACAACAAA TGGCACCAAA GGATTAAGCA GAGAGATCTT GGAATTGCCA 
    AGGGTTGAAT TGGGTCAACT TCACATCGGT TGTATC

AT4G35720.1

Model type
Protein coding
Short Description
Arabidopsis protein of unknown function (DUF241)
Computational Description
Arabidopsis protein of unknown function (DUF241); EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02110.1

Model type
Protein coding
Short Description
CYCLIN D7;1
Computational Description
CYCLIN D7;1 (CYCD7;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 2441 Blast hits to 2441 proteins in 290 species: Archae - 0; Bacteria - 0; Metazoa - 935; Fungi - 354; Plants - 916; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR