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GT18941

CSHL Arabidopsis genetrap mutant lines

Original: GT18941

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18941

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78402 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18941 - 3-prime edge 
    ATGCTCTTCA CCGCCGTCAA CCCAAACAAG GTCGGAATCA GGTACGGTGA 
    GTCCAGCTTC ACGGTCATGT ACAAAGGCAT GCCACTGGGG AGGGCGACGG 
    TGCCTGGATT CTACCAGGAT GCGCACAGTA CGAAGAACGT TGAGGCCACC 
    ATCTCCGTCG ACAGAGTCAA TCTTATGCAA GCCCACGCGG CCGATCTCGT 
    CAGAGATGCT TCCTTAAACG ACCGAGTGGA GCTCACAGTC AGCGGAGACG 
    TGAGGGCTAA GATCCGAGTC ATGAATTTCG ATTCACCGGG TGTTCAGGTT 
    CTTCTCCCTT CATCACGCTC GACCA

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18941 - 3-prime edge 
    CCGACCGGAT TGTATCGGTA TA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78215 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18941 - 5-prime edge 
    CATGTACACC ACTGCCACTT GCTGCAGATC GAACTGCGGC TTCTTCGGCT 
    TCACCGCCAG TATTACGATG AGCACCACCG CCAGAACCAG CAGCGCCAGG 
    AACGCGAACA GCAAGAACAA GCAGCAGCAG CATCCCTTCA GCGACGCCGA 
    CGACGACGAT GAGTAGCTCC GGTAATACGG CTGCTGGTTC TGAGCAGCAA 
    TCGGATCGCC GT

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR