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GT19003

CSHL Arabidopsis genetrap mutant lines

Original: GT19003

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19003

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29491427 [Map]; Strand: c
      • AT1G78390.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 9
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19003 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATCACG ACAACCTCGT 
    CTGTTTCTGG TTCTTCCCAA GAGTTCCATA GATGGAAACA AAAACAATCT 
    GGTACTTCGA TCCATTGAAT CGACGAAGCA TCTTTCGCGT TTTTATTCAA 
    AATCCCGAAT CTTGATTTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29491418 [Map]; Strand: c
      • AT1G78390.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 9
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19003 - 3-prime edge 
    GGTAGAGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATCACGA 
    CAACCTCGTC TGTTTCTGGT TCTTCCCAAG AGTTCCATAG ATGGAAACAA 
    AAACAATCTG GTACTTCGAT CCATTGAATC GACGAAGCAT CTTTCGCGTT 
    TTTATTCAAA ATCCCGAATC TTGATTTCTT

AT1G78390.1

Model type
Protein coding
Short Description
nine-cis-epoxycarotenoid dioxygenase 9
Curator Summary
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
Computational Description
nine-cis-epoxycarotenoid dioxygenase 9 (NCED9); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 3 (TAIR:AT3G14440.1); Has 2892 Blast hits to 2853 proteins in 497 species: Archae - 16; Bacteria - 810; Metazoa - 240; Fungi - 201; Plants - 889; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).
Link
InterPro Scan - TAIR