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GT19019

CSHL Arabidopsis genetrap mutant lines

Original: GT19019

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19019

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 872168 [Map]; Strand: c
      • AT3G03610.1 - [+] show detail - ELMO/CED-12 family protein
        Distance: 356; Region: intergenic
      • AT3G03620.1 - [+] show detail - MATE efflux family protein
        Distance: 1581; Region: intergenic
    Flanking Genome Sequence: GT19019 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TATACATCAC ATTCTACCCG 
    ACCGGATCGT ATCGGCATAT TCATCTCACA CAACTATTCT TACTTACTCT 
    AAAACTCTTT TGTTCGAAAG TCCAAATACT CTCTGTTTTT ACTCTTATGA 
    TATGTTCGAC TACTCAAGTT TCTTCTCTCT CGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 872256 [Map]; Strand: c
      • AT3G03610.1 - [+] show detail - ELMO/CED-12 family protein
        Distance: 444; Region: intergenic
      • AT3G03620.1 - [+] show detail - MATE efflux family protein
        Distance: 1493; Region: intergenic
    Flanking Genome Sequence: GT19019 - 3-prime edge 
    CTTACTTACT CTAAAACTCT TTTGTTCGAA AGTCCAAATA CTCTCTGTTT 
    TTACTCTTAT GATATGTTCG ACTACTCAAG TTTC

AT3G03610.1

Model type
Protein coding
Short Description
ELMO/CED-12 family protein
Computational Description
ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT1G03620.1); Has 825 Blast hits to 825 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 44; Plants - 173; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03620.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G17700.1); Has 8317 Blast hits to 8249 proteins in 1758 species: Archae - 126; Bacteria - 5711; Metazoa - 138; Fungi - 320; Plants - 1334; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink).
Link
InterPro Scan - TAIR