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GT19081

CSHL Arabidopsis genetrap mutant lines

Original: GT19081

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19081

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 213978 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19081 - 3-prime edge 
    TTGGCTCTGA TCTGCCTTAT CGGATGGCTG TTCATCCTCG GGAAGGTGGT 
    CTTATTTGCG CGTTGCCTAA CAGTTGCAAG TGAGTAATTC TCAATTCGAT 
    TTCAAATGAA AGCATATGAT CTTGAAGTTT CTGTATACAA AGTCGTAGTG 
    CATGAGATTT TAGAGAGAAG TTCTGTGAGT TTATGGTTTG GAGTAGAGAG 
    AAATTTACAA GAGATGTGGT AATAAGTGAT GTTCTCTTGA TACACAGACT 
    GTTTCATTGG GAAGACATTA TGAGCCGAGA GGATAATCAG GCTGGTGAGT 
    CGGAGGAAGT GATTAAAGAG TTAAGAGATG TTGGACAACA GTTGGCTCTG 
    GCGTTTAATC CGGAGGGGTC TGTTCTTGCT GCTGGTGCGG AGGTAAAAAA 
    AGGATCTTTG ATGCAATCTC TTTTTAATAA CAGAGACTTA AAACGTTTAG 
    TGGTTCTTAT GCATTTTGTT TTGATGCAGT ATAGGATGGG ACTTTGAGGG 
    TTTTTAAATG GCCTAGCATG AATACTTTAC TTAATGAGTC CCAGGCTCAT 
    TCTTCATTTA AATGCCTTAC TTTCAGGTTT GCTTTCTCTT ATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214209 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19081 - 5-prime edge 
    TAAAACCTTT CCTACTTACA GGTTGCTCCG AGAGAGAATT GGTGTTTAGA 
    TCAACACGGC TTATTAATAT GACATTAGAG ATTCCACTTC CTCCCTCTCC 
    GCCTCCGCCG GACAAAACGA TGCACCGCCG G

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR