1. Home
  2. Mutant Lines
  3. GT19089

GT19089

CSHL Arabidopsis genetrap mutant lines

Original: GT19089

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19089

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19324163 [Map]; Strand: w
      • AT2G47020.2 - [+] show detail - Peptide chain release factor 1
        Distance: -1772; Region: intergenic
      • AT2G47030.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 70; Region: intergenic
    Flanking Genome Sequence: GT19089 - 3-prime edge 
    TTTTTCCTCT GTTTTCTTCA TCTTGGTTTT TTTATACCCC TCCTCGGTTT 
    TCTTAGGGAA GAGAAAAGTA AAGTAATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19324293 [Map]; Strand: w
      • AT2G47030.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT19089 - 5-prime edge 
    TGTCGACAAA GAAGGAACTT ATAATAAAGC AACATGAGTA CTTGTCTGCA 
    TTGCAATATG ACCTTAATTA GATGAAGCAA ATTAACAGAG GAAAAACATT 
    ATAGACTTTC TTAAAAAGTT TTCAT

AT2G47020.2

Model type
Protein coding
Short Description
Peptide chain release factor 1
Computational Description
Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 16260 Blast hits to 16258 proteins in 2815 species: Archae - 0; Bacteria - 10372; Metazoa - 189; Fungi - 181; Plants - 204; Viruses - 13; Other Eukaryotes - 5301 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47030.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
VGDH1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47040.1); Has 2990 Blast hits to 2923 proteins in 471 species: Archae - 6; Bacteria - 907; Metazoa - 1; Fungi - 197; Plants - 1853; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR