1. Home
  2. Mutant Lines
  3. GT19180

GT19180

CSHL Arabidopsis genetrap mutant lines

Original: GT19180

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19180

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20779734 [Map]; Strand: c
      • AT5G51110.1 - [+] show detail - Transcriptional coactivator/pterin dehydratase
        Distance: -270; Region: promoter
      • AT5G51110.2 - [+] show detail - Transcriptional coactivator/pterin dehydratase
        Distance: -270; Region: promoter
      • AT5G51120.3 - [+] show detail - polyadenylate-binding protein 1
        Distance: 0; Region: intron1 (CDS)
      • AT5G51120.2 - [+] show detail - polyadenylate-binding protein 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G51120.1 - [+] show detail - polyadenylate-binding protein 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT19180 - 5-prime edge 
    GGACTCTCCC CGTAACCTCA TGCTCTTGCT ATCGTGCACC GGCATCTTTC 
    TCTCTCTATA TCTCTCACTC GGCGACTGTC GTTAAAGCGA GAAACAGAAG 
    TCTCGGAATT TTAGGGCTTG AAATCGGGAA AGAAGGGAAG GTTTGTTTGT 
    AATTAAAGAT ACCCAAAAAG GATACTTTCG GAATTATGAA ATCTTAAGTA 
    GATTCACCAA AAGTGGACAC AAGAGTACGA TCGAACCCAA TGGGCTTCTC 
    AGATTAAAAA CGTGACGTGT AAAGTCGGTC CCACGAAAGT TTATTGTGG

AT5G51110.1

Model type
Protein coding
Short Description
Transcriptional coactivator/pterin dehydratase
Computational Description
Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1); Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43; Bacteria - 697; Metazoa - 0; Fungi - 2; Plants - 93; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51110.2

Model type
Protein coding
Short Description
Transcriptional coactivator/pterin dehydratase
Computational Description
Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1).
Link
InterPro Scan - TAIR

AT5G51120.1

Model type
Protein coding
Short Description
polyadenylate-binding protein 1
Curator Summary
Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.
Computational Description
polyadenylate-binding protein 1 (PABN1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51120.2

Model type
Protein coding
Short Description
polyadenylate-binding protein 1
Curator Summary
Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.
Computational Description
polyadenylate-binding protein 1 (PABN1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1).
Link
InterPro Scan - TAIR

AT5G51120.3

Model type
Protein coding
Short Description
polyadenylate-binding protein 1
Curator Summary
Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.
Computational Description
polyadenylate-binding protein 1 (PABN1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1).
Link
InterPro Scan - TAIR