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GT19240

CSHL Arabidopsis genetrap mutant lines

Original: GT19240

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19240

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178136 [Map]; Strand: w
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -886; Region: promoter
    Flanking Genome Sequence: GT19240 - 3-prime edge 
    TTACCGGACC GTTTTCATCC CTAGTTTTTA GGTAGACACA TCAACCCTGG 
    TGTAAGATTC GGTCTGTTCT TAGCTCGGAA GTTGTCTCTG ACCAGAGCTG 
    TGTTCTACAT GTTTATGCAA TGGCTCGGAG CCATCTGTGG TGCCATCTGT 
    GGTGCCATCT TTAAGACTAG TGAATATCGG CGCATCTTTA AGCCTAGGGA 
    ATTTCGGCCC ATCTTCAAGA CTAGTATGGA GGCCTGTTAA GGGTCTTCTA 
    ATACAGCTCA ACAAGCCTTT TTGGGTAAGC CTAGTGAATT TGTAATACAC 
    TTTGTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178155 [Map]; Strand: w
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -867; Region: promoter
    Flanking Genome Sequence: GT19240 - 5-prime edge 
    CCTCTTTCTC CCTGCATGGG TGAAATCGGT CGGTTCCTCC ATTCCCGTAT 
    ATGTTTGAGT TAACGAATAA ACGATTCTCG GTTCATCTCT CTCAACTACT 
    TATATATGTC CACATCATTT AAAATCTTAA ACCAAAATTG AATAATTTAA 
    ATAACTCATA AAACTTTTAT ATGTATGCTT GTCTTACATT CAAAATGCGC 
    ATTATCACTA GTTTAATATT TCTATAACTG ATCAGTTTTT AATTGGTTGA 
    CACCAAATGA AGTGGTCACT GACGTTATAC GATTCTATTG GGCTGCATAT 
    TAAAGTTTTT TTAAGAATTG GAACTTTTAA TATTATCTAG GGTTGAAGGA 
    ACTAAAACGC CTGTCCTAAT GATGTAAGGC TAGCCCTAAC CTACATGTAT 
    CTCAAGCGTC CAAATTTACG TTAATACAAT TTTCAAAGCA T

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR