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GT19241

CSHL Arabidopsis genetrap mutant lines

Original: GT19241

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19241

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6997935 [Map]; Strand: w
      • AT2G16120.1 - [+] show detail - polyol/monosaccharide transporter 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19241 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGCTCTT TGTATTCATC 
    GTGGGTTTGG GAGAGTGTTA ATGAAAAGTA TTATTCAGTA AGAAAACCCT
    CTTCTTCTTT TATTCACACA ATAGATCCAA AGTTTTTTTT TATGTATGAT
    TGGAAGTGAA AACGGAGGTT GATGATGATA ATGTGATTTT TGTATGCAGA
    TTTTTATCAA TATTGGTATA CTTTTGGGAT ACGTATCCAA TTACTTCTTC
    TCTCTCGACC AGAAGCAAAC CTCCTTCTCA ACCATAAATT A
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12619890 [Map]; Strand: w
      • AT5G33382.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT19241 - 5-prime edge
    TTTCTCCCTG CAAAGAGCTT ATACTTATAC TACAAAAAGA ACCTTCTGGA 
    TCCTTATTTG CAGTCAAGGA TCTGGTTACA CTTGTCAATC ATCTAGCCAC
    TCTCTTCTTC TGATGTGATA GGACTGAAAC GGTTACATAG TACGATGGTC
    GGAGAGTCAG CTGGTTGACT CTGCTTCTTC TGCAAATTCT GCAAACTCTG
    TTTTGTCTGA CCGTGATGTT GAGAGGAACT CTTGACTTGG ACATTGTTTT
    GTTGGGCTTG TGATTGGGCT GACTGGGCTT GTGTCTTGTC ACTTACATTC
    CCCCTCAAAC TGAGTGTGGG AGGAAGTCGA ACATTCAGTT TGTGTCTTAA
    CTGTTGAAAG GATTGTCGTG GAAGAGACTT GGTGAAAGTG TCAGCAAGTT
    GCAAGACAGC CGGAATGTGT TGAATCTCAA GAACACCAAG TGCAACTCTC
    TCACGAACAT AGTGATAGTC AACATCGAAG TGTTTGGAAC GATT

AT2G16120.1

Model type
Protein coding
Short Description
polyol/monosaccharide transporter 1
Computational Description
polyol/monosaccharide transporter 1 (PMT1); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: polyol/monosaccharide transporter 2 (TAIR:AT2G16130.1); Has 36841 Blast hits to 36098 proteins in 2329 species: Archae - 707; Bacteria - 19057; Metazoa - 5293; Fungi - 7417; Plants - 2614; Viruses - 2; Other Eukaryotes - 1751 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G33382.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR