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GT19261

CSHL Arabidopsis genetrap mutant lines

Original: GT19261

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19261

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 373651 [Map]; Strand: c
      • AT4G00885.1 - [+] show detail - MIR165/MIR165B; miRNA
        Distance: -3660; Region: intergenic
      • AT4G00890.1 - [+] show detail - proline-rich family protein
        Distance: 309; Region: intergenic
    Flanking Genome Sequence: GT19261 - 5-prime edge 
    TTCTCCCTGA CTATTAGACT AGAGTCCTTT GCATATTTTA ACGCAACATG 
    CATAACTAGA ACTCTTTTAC CGTCCTGTAT TTTGAGTTTA CTTTTAAGTT 
    GTAATGTTAT GTTGTTCATC TCTCTCGACC

AT4G00885.1

Model type
miRNA
Short Description
MIR165/MIR165B; miRNA
Curator Summary
Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC
Link
InterPro Scan - TAIR

AT4G00890.1

Model type
Protein coding
Short Description
proline-rich family protein
Curator Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
Computational Description
proline-rich family protein; Has 74402 Blast hits to 44432 proteins in 1604 species: Archae - 100; Bacteria - 7075; Metazoa - 32308; Fungi - 16616; Plants - 5983; Viruses - 2030; Other Eukaryotes - 10290 (source: NCBI BLink).
Link
InterPro Scan - TAIR