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GT19313

CSHL Arabidopsis genetrap mutant lines

Original: GT19313

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19313

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2215019 [Map]; Strand: w
      • AT4G04440.1 - [+] show detail - transposable element gene
        Distance: 625; Region: intergenic
      • AT4G04450.1 - [+] show detail - WRKY family transcription factor
        Distance: -3360; Region: intergenic
    Flanking Genome Sequence: GT19313 - 5-prime edge 
    TTCTTTTTGT CTAATTCACA ATCTCGGTAC AAAATCTCCA TCGCTATCTC 
    GTAGGGTGAA ACATGTGTAT CTGAGAAGAC ATTTATATCT GAGCAGACAA 
    GAAGAATGAA ACAAAGCATT CCAAGGTATC TAGTAGGTTG GAATCTATCC 
    TGCTTG

AT4G04440.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.3e-215 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G04450.1

Model type
Protein coding
Short Description
WRKY family transcription factor
Curator Summary
member of WRKY Transcription Factor; Group II-b
Computational Description
WRKY42; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 31 (TAIR:AT4G22070.1); Has 3599 Blast hits to 3152 proteins in 220 species: Archae - 0; Bacteria - 6; Metazoa - 41; Fungi - 2; Plants - 3474; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR