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GT19593

CSHL Arabidopsis genetrap mutant lines

Original: GT19593

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19593

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14675137 [Map]; Strand: c
      • AT2G34790.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19593 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACGTAC 
    GCTCCACCGA CTAAGTGGCC ACCGATGCCA AGGCTTGAGC ATAAACCGGC 
    CGGAAAACCA TGGGTTTGGC TTTTCTCTTG GATCCTGTTA ACCGAGACAC 
    AACAACCGAT TAATTATCGG ATCATTAACG AAAGCTCAAC CATGTGATCG 
    GTTTGATTTT ATTTTGGTTT GTTGGTTAAA CCGGT

AT2G34790.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
MATERNAL EFFECT EMBRYO ARREST 23 (MEE23); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: polar nucleus fusion, embryo development ending in seed dormancy; LOCATED IN: cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30760.1); Has 4988 Blast hits to 4831 proteins in 776 species: Archae - 82; Bacteria - 2407; Metazoa - 5; Fungi - 1644; Plants - 646; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link
InterPro Scan - TAIR