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GT19610

CSHL Arabidopsis genetrap mutant lines

Original: GT19610

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19610

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 140295 [Map]; Strand: c
      • AT4G00320.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19610 - 5-prime edge 
    CCTACTTTCT CCCTGCCAAA ACCGCGAGAC GAAGGGATCT GTAGATCAAT 
    ATCTAACACA CCACGTTTCA ACACTTTAGG TATCCATTCA AGCACCGAGT 
    TTTGCTCAAC ACCTTCACAC TTAACGTAGA ATTTGTTCAA CGTAGCATTC 
    GCTTCCGCTT GCAAAGCCAA TACACTATCC ACGACAAGCA TAAAACTTTC 
    AGAACCCTTT CTCCTCTCTT CACAAGTCAT TTGAGGATCG AAACGGAAGG 
    ATTCATCAAA GTCAAGGTTT GGCATAAAAG CAAGCAAAGG CTTCCATCTT 
    TTGGCAAGAA CGGTAGTTGA AGCAGCTACT TTAGTTGGAA GAAATGATAA 
    TATGTGACAA ATCATTGTAT CGTGTAAACC GCTGATTCCA TCTCTAGAAC 
    CATCAAAACA CTTCTTTTTC GAACCCATTT TGTGACAGAA ACAGATCAAC 
    AGTTACAACC TGAACAAAGA CATGTAATTC TTGTAAGAAG AAGTAAGTGC 
    TCACAAAACC AAAATCGTTG AAGAGACTTA CCAAATGTGA ATGAGACCAT 
    AAGAAGAACA ATGGAGAAAA CTTTCTTAAG TATCAATGAA GAGTTTTGAC 
    ATCATTGGCC AAACCAAATT CAGGGTTTTT CTATGGGATA GAGTAAGGGA 
    AGCGAGAAGA CGAGATAGAG GAAGGGAAGC GAGAAGACGA ANAGTTTAGG 
    GCCCTTTTCT TTGAAAAAAT TAGGGCTCGG CTTATGGGTA AACCGTCGGG 
    TTAAATGGGT AATGGTCCGG TTCCGGTCCG GTTCGGGTTT G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 140178 [Map]; Strand: c
      • AT4G00320.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19610 - 5-prime edge 
    CACTTAACGT GCAATTTGGT CAACGTATCA TTCGCGTCCG CTTGCTCAGC 
    CTGTACCCTA TCCACGACAA GCATATGACT TTCTTAACCC TTTCTCCTCT 
    CTTCACAAGT CATTTGAGGA TCGAAACGGA AGGATTCATC AAAGTCAAGG 
    TTTGGCATAC AAGCAAGCAA AGGCTTCCAT CTTTTGGCAA GAACGGTAGT 
    TGAAGCAGCT ACTTTAGTTG GAAGAAATGA TAATATGTGA CAAATCATTG 
    TATCGTGTAA ACCGCTGATT CCATCTCTAG AACCATCAAA ACACTTCTTT 
    TTCGAACCCA TTTTGTGACA GAAACAGATC AACAGTTACA ACCTGAACAA 
    AGACATGTAA TTCTTGTAAG AAGAAGTAAG TGCTCACAAA ACCAAAATCG 
    TTGAAGAGAC TTACCAAATG TGAATGAGAC CATAAGAAGA ACAATGGAGA 
    AAACTTTCTT AAGTATCAAT GAAGAGTTTT GACATCATTG GCCAAACCAA 
    ATTCAGGGTT TTTCTATGGG ATAGAGTAAG GGAAGCGAGA AGACGAGATA 
    GAGGAAGGGA AGCGAGAAGA CG

AT4G00320.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G41830.1); Has 1728 Blast hits to 1676 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR