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GT19621

CSHL Arabidopsis genetrap mutant lines

Original: GT19621

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19621

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20936523 [Map]; Strand: w
      • AT5G51545.1 - [+] show detail - low psii accumulation2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19621 - 5-prime edge 
    TCTCCGTGTT CCTCTCCCTC GACCACCTAT CATCTCTTCT TCACTACCCT 
    ATACCCTAGA TTCGCAATCA AATGTCAAAA TTCCCAAATC CATTCCGATA 
    CAACAGAGGA TCCATCTCGT TCAAAGAATT CAAGCTCTTC CGGCGTAGGA 
    TTCGGTTCAC CGGCGTCTTC TTCTTCGCCG GCTAAGAAAT TGAGTGCGGC 
    TACATCGGGA AACAAGAAAG GGAAAGGTAA GAGAGAGGTG AATCGGCGTG 
    CTCCTGTGGA GAAACCTGTG TTCATGAACG AACAAGGAGC GGCCAAGGCA 
    GAGGAGCATA GACAATACGA AGACGCGTTT CTTCTTACTT GGCTTGGGCT 
    TGGTATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20936523 [Map]; Strand: w
      • AT5G51545.1 - [+] show detail - low psii accumulation2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19621 - 5-prime edge 
    TCTCCGTGTT TCTTCTCTCT CGACCACTAT CATCTCTTCT TCACTACCAG 
    AAACCCTAGA TTCGCAATCA AATGTCAAAA TTCCCAAATC GAATCCGATA 
    CAACAGAGGA TCCATCTCGT TCAAAGAATT CAAGCTCTTC CGGCGTAGGA 
    TTCGGTTCAC CGGCGTCTTC TTCTTCGCCG GCTAAGAAAT TGAGTGCGGC 
    TACATCGGGA AACAAGAAAG GGAAAGGTAA GAGAGAGGTG AATCGGCGTG 
    CTCCTGTGGA GAAACCTGTG TTCATGAGCG AAGAAGGAGC GGCCAAGGCA 
    GAGGAGCAGA GACAAAACGA AAACGCGTTT CTTCTCACTC GACCAGGGCT 
    TGGTATCGTC ATCCTCATCG AAGGCATTAT TCTCGCTGCT TCAGGTATTG 
    AATCTGGGCA TTTGCATAAA ACTTGGTTTG GTTTGTTAAC AGTCGTTAGT 
    GATATGGATC AAATTGCTTA AATCTGTGAT TTAGCTAGAG AGATAATGAA 
    TGATCAGAAG AGGATACTTC TCATTGCCTC TTCTTAGTAG TCTTTGAATA 
    TACAGTTATT GAAATCTCCA ATTCAATTCA ATAGATGTGT TGAGAGGATA 
    AACAGTTATT GAAATCTCCT TTGTGTGTTT GTGTTGGCTT CTG

AT5G51545.1

Model type
Protein coding
Short Description
low psii accumulation2
Curator Summary
Encodes LPA2 (low psii accumulation2), an intrinsic thylakoid membrane protein required for efficient assembly of Photosystem II.
Computational Description
low psii accumulation2 (LPA2); INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR