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Mutant Lines
GT19636

GT19636

CSHL Arabidopsis genetrap mutant lines

Original: GT19636

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19636

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 20936643 [Map]; Strand: w
- AT5G51545.1 - [+] show detail - low psii accumulation2
  Distance: 0; Region: exon1 (CDS)

TTCTCGCTCT CCTACTCTTC CGGCGTAGGA TTCGGTTCAC CGGCGTCTTC 
TTCTTCGCCG GCTAAGAAAT TGAGTGCGGC TACATCGGGA AACAAGAAAG 
GGAAAGGTAA GAGAGAGGTG AATCGGCGTG CTCCTGTGGA GAAACCTGTG 
TTCATGAGCG AAGAAGGAGC GGCCAAGGCA GAGGAGCAGA GACAAAACGA 
AAACGCGTTT CTTCTCTCTC GACTAGGGCT TGGTATCGTC ATCCTCATCG 
AAGGCATTAT TCTCGCTGCT TCAGGTATTG AATCTGGGCA TTTGCATAAA 
ACTTGGTTTG GTTTGTTGAC AGTCGTTAGT GATATGGATC AAATTGCTTA 
AATCTGTGAT TTAGCTAGAG AGATAATGAA TGATCAGAAG AGGATACTTC 
TCATTGCCTC TTCTTAGTAG TCTTTGAATA TACAGTTATT GAAATCTCCA 
ATTCAATTCA ATAGATGTGT TGAGAGGATA AACAGTTATT GAAATCTCCT 
TTGTGTGTTT GTGTTGGCTT CTG

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 11341898 [Map]; Strand: w
  - AT1G31670.1 - [+] show detail - Copper amine oxidase family protein
    Distance: 9; Region: intergenic
  - AT1G31690.1 - [+] show detail - Copper amine oxidase family protein
    Distance: -2082; Region: intergenic
Flanking Genome Sequence: GT19636 - 5-prime edge
```
TCCCCCTCAC ACCAACCCAT CAAACTCAAC ACCACGCCAA CGTGCACTGC 
CAGGAACGAT TAATAACTAG CTTACCATTA ATGATTTGAT CCGTATAAGT 
ATTCATGTCT ATCCATCAAA ACTGGATAAT ATGCAGTTGA CTGTTAATTT 
AAGGTCTACA AGTTATTATT GATAGAGTAG TTGCTTTTCT ATCAAATTGT 
TGTTAGTATT ATCTCTTTTA ATTTTTGGTT CATCTCACTC GAC
```

AT1G31670.1

Model type: Protein coding
Short Description: Copper amine oxidase family protein
Computational Description: Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1); Has 1560 Blast hits to 1555 proteins in 278 species: Archae - 14; Bacteria - 380; Metazoa - 250; Fungi - 453; Plants - 252; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G31690.1

Model type: Protein coding
Short Description: Copper amine oxidase family protein
Computational Description: Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G51545.1

Model type: Protein coding
Short Description: low psii accumulation2
Curator Summary: Encodes LPA2 (low psii accumulation2), an intrinsic thylakoid membrane protein required for efficient assembly of Photosystem II.
Computational Description: low psii accumulation2 (LPA2); INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR