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GT19663

CSHL Arabidopsis genetrap mutant lines

Original: GT19663

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19663

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6774100 [Map]; Strand: c
      • AT1G19570.1 - [+] show detail - dehydroascorbate reductase
        Distance: 0; Region: intron2 (CDS)
      • AT1G19570.2 - [+] show detail - dehydroascorbate reductase
        Distance: 0; Region: intron2 (CDS)
      • AT1G19580.2 - [+] show detail - gamma carbonic anhydrase 1
        Distance: -660; Region: promoter
      • AT1G19580.1 - [+] show detail - gamma carbonic anhydrase 1
        Distance: -663; Region: promoter
    Flanking Genome Sequence: GT19663 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAACTAGACC GATCTTAAGG GTTTAGGCGT GAGAGAAACT GACCACTGGG 
    GTTTGTCAGA GAGGTTAATC AGATGGATTT TGTAGGTAAG ACTCTTCTCC 
    TCGAGTGTGA GAAGAGCCCG TTGGCTGAAC GGACCTAAAA CGACAAACAA 
    ACACTTAAAT TAGTAAATTT ACCAACGATC AAAGCTCAGA AACTAAGAAT 
    TGCAATATCA AAAGCTTAAT GCAAAACAAA AACAGAGAGA GAAAGAGAAG 
    ATGGTTACAG TCGCCGAGAT GATCAGGAGC ACCAACAGCA GCTTTCACAC 
    AGATTTCCAG AGCCATCTTG ATTCTTCTTC CTTTGTTTGC AGAGACGGAT 
    GAATGATTGA GTTAATCAGT GAGAAGGCTT AGCTTTTAAA CTGAATTATT 
    ACCATTCTCC ACCCACCAGT GGGCCATTTT TACCCGATGT TTATCTTTTC 
    TCACGTGTTA TGCGTTGCAA GTGACGACGA TACGAAACGA CATTGTTACT 
    GATAGGGCCA TTTGATTTTT GGTCGGCAGG TTTTGGACCG TTCAATTTAG 
    TGAAAATATA GTAATAAATT CGTACCGAAT AATATAATCG GTTTAATGAA 
    ACTACTACCT GAAATATCGA ATTAGATTTG GTTCATATTT CGTATTGTTT 
    TGGTTCGATT AAACCATATT AAACCACTGT AACTGTAATT TATTGTTTCG 
    CCGTCCCGGA ATGTTCCTGT TGA

AT1G19570.1

Model type
Protein coding
Short Description
dehydroascorbate reductase
Curator Summary
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description
dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 5234 Blast hits to 5161 proteins in 1116 species: Archae - 0; Bacteria - 2090; Metazoa - 1076; Fungi - 186; Plants - 896; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19570.2

Model type
Protein coding
Short Description
dehydroascorbate reductase
Curator Summary
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description
dehydroascorbate reductase (DHAR1); FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, apoplast, peroxisome, chloroplast, plasma membrane; EXPRESSED IN: phloem, guard cell, cultured cell, seed, leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 4831 Blast hits to 4829 proteins in 1069 species: Archae - 0; Bacteria - 2139; Metazoa - 988; Fungi - 182; Plants - 765; Viruses - 0; Other Eukaryotes - 757 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19580.1

Model type
Protein coding
Short Description
gamma carbonic anhydrase 1
Curator Summary
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265; Bacteria - 7962; Metazoa - 13; Fungi - 83; Plants - 197; Viruses - 0; Other Eukaryotes - 2374 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19580.2

Model type
Protein coding
Short Description
gamma carbonic anhydrase 1
Curator Summary
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase 1 (GAMMA CA1); CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 3 (TAIR:AT5G66510.1).
Link
InterPro Scan - TAIR