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GT19680

CSHL Arabidopsis genetrap mutant lines

Original: GT19680

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19680

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22282088 [Map]; Strand: w
      • AT3G60286.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: intron1 (5UTR)
      • AT3G60290.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -539; Region: promoter
    Flanking Genome Sequence: GT19680 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAATGAAAAT GAATGTTATC TGAATGTGGC TCGAATCAGT GAGGTGATTT 
    CCTTGGGATG AAGAAAAAAA GTGATGATTT GTTTTCTTCT TGTGACTCAG 
    AAGAAGATAG AGAGTGGTGA GATTCAATGG AAGGAGAAAG AAGGAAACCA 
    ACAAATAATA AGTGGTGCAA GTTGAAAGAC AAGATTCAAG TTGGTGTTGG 
    TTCCAAAATT ATATCAACAA AACAATTCTT CTTGTTCGCA TCTTTGAGTC 
    TCCTCTTCCA CTTCTGAAAC GCGTTGACTT TGGCTTATGT CGGTATTTGG 
    GCCAAACAAT TAGTGTTAGC CCATCTTTGT AATAATCAGT TTGGGCCTTC 
    GGTTTTAGCC CTTGAAGTTT TCTTTTTGGT ATTTTTTGGG CTTAGTTTTC 
    TTTTTCTTTT AGCCTTGTTG TATGATTGTT TATTTTACCA AACTCAAATA 
    TTTGTTTTAA TGGTAAACAA ACAAAAAAAA AACCAAAATT TTTTTCTTTT 
    TTTGGACTTA AAACCAAAAG GGGGAATAAA AAACCACCTT ACCTTTTTTA 
    CTTCCCAAAA CCAAACCACC AAAGGCAACC TAATTTTTTC CAATTCCCAA 
    ATAACCCTTT GGAGAATAAT TTTTTTTGTT GCCAAAAAAC CTTGCCACCC 
    CTTTATTTTT CGGGGAGGGT TTAGGTTCCC CCCTTTTTAA AAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22282417 [Map]; Strand: c
      • AT3G60286.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -169; Region: promoter
      • AT3G60290.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -210; Region: promoter
    Flanking Genome Sequence: GT19680 - 5-prime edge 
    GTTCTATACA CAAAACATTA AATGAATGGT TAGATGATTT CCCGAAATAA 
    AGAATTCCCA TTTGGTTTAA AGATATTCCA CATTGGATTG AAAGGTATCT 
    GTGAAGGGTG TATGACTAGT TGCATGTTTT GCTATTTGGA TATATTATCA 
    AATGAAAATA GTCATCATGC ATGTTTTTCA TAACTCTTAT TATATTGTAC 
    ACCTCAACGG TTTCTCTCTT TTTCCTCATC TAGGTCATAC ATAGGATATT 
    TTCTTCTGCG AAGACGTCAT TAAAAAAAGT GGAAACATGG ACTAGTGTTG 
    GTGGTATAGG TACATAAACA TAGAACTATT CTTTTTATTT AATTGATGAT 
    GATATAAATA TCCAAAGAAA AGGAGAAGTT ATGGAGAGGT TTGGAGGTAT 
    ATGAAAATCA GGGATGAAAG TAGGATGGGA AAATCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22282405 [Map]; Strand: c
      • AT3G60286.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -157; Region: promoter
      • AT3G60290.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -222; Region: promoter
    Flanking Genome Sequence: GT19680 - 5-prime edge 
    AACATTAAAA TGAATGGTTA GATGATTTCC CGAAATAAAG AATTCCCATT 
    TGGTTTAAAG ATATTCCACA TTGGATTGAA AGGTATCTGT GAAGGGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22282173 [Map]; Strand: w
      • AT3G60286.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: intron1 (5UTR)
      • AT3G60290.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -454; Region: promoter
    Flanking Genome Sequence: GT19680 - 5-prime edge 
    TCTCCATAAC TTCTCCTTTT CTTTGGATAT TTATATCATC ATCAATTAAA 
    TAAAAAGAAT AGTTCTATGT TTATGTACCT ATACCACCAA CACTAGTCCA 
    TGTTTCCACT TTTTTTAATG ACGTCTTCGC AGAAGAAAAT ATCCTATGTA 
    TGACCTAGAT GAGGAAAAAG AGAGAAACCG TTGAGGTGTA CAATATAATA 
    AGAGTTATGA AAAACATGCA TGATGACTAT TTTCATTTGA TAATATATCC 
    AAATAGCAAA ACATGCAACT AGTCATACAC CCTTCACAGA TACCTTTCAA 
    TCCAATGTGG AATATCTTTA AACCAAATGG GAATTCTTTA TTTCGGGAAA 
    TCATCTAACC ATTCATTTAA TGTTTTGTGT ATATGAACAC AAGCAGGTAG 
    TTTCCAAAAC CGTATTCAAA GAGAAAAGCA GAAATGTTGA CCTTTTCTAA 
    AACCAGGTTA TCTTCATGCG TATATAAAAA CGGACTTTGC ATGTTTGCTT 
    ACTATAACTT AGGACAGAGT GGAATCCCAA GTACCAAAAC AGATTTCTTG 
    CAAAAAAACA ATGGAGGAAA CAAATAAGAG TGTGGTTAAT GATTACTTTA 
    CCAGTGCTAT GGAACTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22282197 [Map]; Strand: w
      • AT3G60286.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G60290.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -430; Region: promoter
    Flanking Genome Sequence: GT19680 - 5-prime edge 
    GGATATTTAT ATCATCATCA ATTAAATAAA AAGAATAGTT CTATGTTTAT 
    GTACCTATAC CACCAACACT AGTCCATGTT TCCACTTTTT TTAATGACGT 
    CTTCGCAGAA GAAAATATCC TATGTATGAC CTAGATGAGG AAAAAGAGAG 
    AAACCGTTGA GGTGTACAAT ATAATAAGAG TTATGAAAAA CATGCATGAT 
    GACTATTTTC ATTTGATAAT ATATCCAAAT AGCAAAACAT GCAACTAGTC 
    ATACACCCTT CACAGATACC TTTCAATCCA ATGTGGAATA TCTTTAAACC 
    AAATGGGAAT TCTTTATTTC GGGAAATCAT CTAACCATTC ATTTAATGTT 
    TTGTGTATAT GAACACAAGC AGGTAGTTTC CCGACCGGTA CTCCACGAGA 
    AACGCCTAAA TGTGCACCTT TTTCTAAAAC CAGGTTATCT TCATGCGTAT 
    ATAAAAACGG ACTTTGCATG TTTGCTTACT ATAACTTAGG ACAGAGTGGA 
    ATCCCAAGTA CCAAAACAGA TTTCTTGCAA AAAAACAATG GAGGAAACAA 
    ATAAGAGTGT GGTTAATGAT TACTTTACCA GTGCTATGGA ACTTACAGAG 
    TCAGGTGACC CTCACGTGCC TACCCGTTAC ATTCTTCCAC CTTCACAACG 
    ACTAATGCTC GGTCCAAGCA TTGGCACCAG TACCATCAAT CTTCCTGTCA 
    TTGATCTC

AT3G60286.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60290.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: response to karrikin, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G44800.1); Has 8462 Blast hits to 8411 proteins in 989 species: Archae - 0; Bacteria - 1081; Metazoa - 111; Fungi - 1027; Plants - 4887; Viruses - 0; Other Eukaryotes - 1356 (source: NCBI BLink).
Link
InterPro Scan - TAIR