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GT19730

CSHL Arabidopsis genetrap mutant lines

Original: GT19730

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19730

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22282378 [Map]; Strand: c
      • AT3G60286.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -130; Region: promoter
      • AT3G60290.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -249; Region: promoter
    Flanking Genome Sequence: GT19730 - 5-prime edge 
    TCCCCAAATA AAGAATTCCC ATTCGGTTTA AAGATATTCC ACATTGGATT 
    GAAAGGTATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13634 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -275; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -993; Region: promoter
    Flanking Genome Sequence: GT19730 - 5-prime edge 
    CTCCTCGGAG ATCAGCTCAA GCAGCTTCCT CTTGGCTCGC TGTGCTGGAT 
    TCGCGAAGAT CGAGCAGCTT GTTCGAAAAC CGGCACGACG AGTGCGGCGG 
    AGTGGAGGAG AACATGCCGA CAGCGAGAGC GCGAGCGCCA TGTTTGCAAA 
    TTGCAATTTC CATGGTTAGG TTGTTGCACG AAGAAGAAGA AGAGATACTC 
    TGTTATTTGG GTTTCTTTTC TAAAAAGCCC ATTTGGGTTT TATTTGCTTC 
    ATCTCACGCG ACTAAGCCCA AGCCCAAGGA AATAGCTTGC ACGTGCGCGT 
    CACGTGTCTA CGATAAAACC CCAGCAACGG CGAGCGGCTT TGCCTTGCTC 
    ATTCAACCTC GCTCGTCGTC GTCGTCGTCT CCACTTCGAT TTTTCAATCA 
    GTAATATTGG TGGTTCAGAG ATGATGATGA TGAATCTTTT AAGGAGATCA 
    ACGATAGCCA TCGGCCGCCA ATCAAAATCG AAACTGGCGT CGTTTTCCTC 
    CGCTACACAA CCTTGTTCCG GAATCCCAAA ATCGGTAAGG CTTTCGTATT 
    TCATCT

AT3G60286.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60290.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: response to karrikin, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G44800.1); Has 8462 Blast hits to 8411 proteins in 989 species: Archae - 0; Bacteria - 1081; Metazoa - 111; Fungi - 1027; Plants - 4887; Viruses - 0; Other Eukaryotes - 1356 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00040.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Computational Description
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR