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GT19741

CSHL Arabidopsis genetrap mutant lines

Original: GT19741

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19741

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19741 - 5-prime edge
    TTTTCTTATT TCATAGTTTC AAACGGTTTA AAAAATGTTT CCGCCGGGGA 
    TGAAAGTAGG AGGGGAAAAT CCCG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644739 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 403; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 2953; Region: intergenic
    Flanking Genome Sequence: GT19741 - 5-prime edge
    TTTTTTTGAC CGTTTGAAAC TTTGAATTAA GAGAGAAACT AAGATTATTT 
    ACACTCTATA AATACTACTA CTCCTTTCTT CGGACAGACA CCTGAATCTT
    ACAAATGTTA AAAACACTGT TTTTTTTAAT TCTCTTATTA GTTCTTCTCT
    CTCGACTAAG TTCTCACTCA ACATATCTAT ATATCTCAAC ATCCGAGAGA
    AGAACATAAA AGCAGCATCT TACAGGTAAA ATACTCTTGG TCTAATTCCT
    CTAGTTTCAT AGTTTGTATA TCGTTAAAAG ATCCTTGTTA GTCTCTGCTA
    ATTACTCTGT TCGTCATCGT TCAAACATTT TTATGGAGTT AAAACAAACA
    TGATGCTCAG TTTTTAATCC ATTTTATAGA TCTTGCTGTC TTAAATCTAA
    TGAACTGATT TGTCGCTATA TATGTGTTAA TAACTTTAAC AATAAGAATT
    GTGTTCTTAA ACAGAGTTTT AGTTATATAT GAGAGTCTTT GATTATATAT
    CATGCTGTCT TAATTAAGTT CAATGATGTG AGAATAATTT AGTTAGATAT
    TATGTTATGT CTAAGAAAAC ATACACGGTT TTTTGGTCTA TTGATTTTTG
    GATTTTTAAA T

AT4G01510.1

Model type
Protein coding
Short Description
Arv1-like protein
Computational Description
ARV2; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT1G01020.1); Has 318 Blast hits to 318 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 116; Plants - 41; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR