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GT19749

CSHL Arabidopsis genetrap mutant lines

Original: GT19749

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19749

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19749 - 5-prime edge 
    GACTTCTGAG ACGCTTCTCT TCTTATTTCG TTCTCCTAAT TGGCGAAACT 
    ATCCCTGATT TGCGAAGAAT GAGCGCGTCT ACTTCCCGCT CCTAAGTTTT 
    TGGGGTCATA GTCTCATGTG GGCCTTTTTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 619688 [Map]; Strand: c
      • AT2G02350.1 - [+] show detail - SKP1 interacting partner 3
        Distance: -597; Region: promoter
      • AT2G02360.1 - [+] show detail - phloem protein 2-B10
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT19749 - 5-prime edge 
    GTAATGCGGC GGACAACCCG ATTATCGGCT CATCTATTGG TATTATTGTC 
    TGTTCCAGTT GATAAAGGTG TAGTTGTGTT TGTTTTAATG ATTGGTTCAA 
    TTAGAGTGTA TGTGGTGAAC AACGTACTTT GCTAGTTGCT AGGTAGAAAT 
    TTTGCGAAAC ATACTCATTG GTGCAAAGAA TTGCATATAT ATAAGATGAA 
    CTTAAGAAAG ATTCAGAAGT CATTTAAAGT CTCAGCTTCT AGATAGATGC 
    AGAAACTACT GATCCATGGG GCCAAGACAC GTCATACACT TTAGAACCAA 
    AGGCAGAGGA GTTTTTCGGT TTGTTGTTGT ATTAGATAGA GACTTGGTAC 
    CTTTCTAGAG CTTTCCACTT TGTGTTTTTT CTTCCCTAAC CTTTCTAAGT 
    AGTACTTGAT CACCAGAACT CATACTCAAT AGATTCCTAC ATTGTGTTCA 
    AGAAAACTGA AATTGTTATG GCTTTAGGGT GTTGTGAGTT GTACCAAGGT 
    TCTTTGTTTG CCGGCAAGCC CAAATCAAGG CCTCTCTCTT ATGGGCTTCT 
    TTATTGTAAA AGGCCCATAT GAGACTATGA CCCCAAAAAC AAAGGAGCGG 
    GAAGTAGACG CGCTCAT

AT2G02350.1

Model type
Protein coding
Short Description
SKP1 interacting partner 3
Curator Summary
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Computational Description
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02360.1

Model type
Protein coding
Short Description
phloem protein 2-B10
Computational Description
phloem protein 2-B10 (PP2-B10); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 572 Blast hits to 558 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR