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GT20004

CSHL Arabidopsis genetrap mutant lines

Original: GT20004

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20004

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 59142 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT20004 - 3-prime edge 
    GACGTTACCG ACCGTTTTCA TCCCAACAAC GAAGAAGAAG AAGAAGAAGA 
    GCTTCAAGAA GACAAATACA CTATTTTTTA TCGTCTGCAA TGCCCTTACC 
    CTGTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 59245 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT20004 - 5-prime edge 
    GTGATGTGGT GTGGTGAGGT ATATTGGATG CGTGCAAGAT ATTAAAGTGG 
    CAAAGTGGGC TTCCTCCTTT CTTCTTCTCT CTCAATTACG TTTCCTATCA 
    TTTTGCCTTT GTCATTAACT TAGCTGATTA AACAATTCAT CAGCTTCTCT 
    TACACAACAT TTTGTTAATC TTTGCTTTCT AATCTTAACT ATGTCTTCTA 
    TTACAACCCC ACTCTTACAT CACGCGCGTG GCTTGCAAAC TCCTTTCAGT 
    GACATGAACA TGATGGTAAA CAAAAATACT AAATGTTATG ATATACTTTT 
    AAATATTGTA TTTGTCTTCT TGAATTACTA GAAACTATTT AAAAAAAAAA 
    CATTTTTCCC ATATTTTTGA TGTTGTACTG TATATTTAAA TGTCAAAAAA 
    CTTGCCCAAA AAAAAAAAAA AGGGGGTCAA AAAATTGGGG GAAGGTTTTT 
    TTTTTTAAAA ATTTTTTTTT CAGAAAAAAA ATTTTGGGGT TAAAAAAAAA 
    ATTTGGGAAA TTTTTTTTTT TTTTTTTTTC CCAAAGGGGG GGGGGGTTTT 
    TTCCTTTTGG GGGACTTTGC CCCCCAAAAT TTTTTTTT

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR