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GT20047

CSHL Arabidopsis genetrap mutant lines

Original: GT20047

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20047

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1744313 [Map]; Strand: w
      • AT1G05805.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -460; Region: promoter
    Flanking Genome Sequence: GT20047 - 5-prime edge 
    AGGTGAAAAT TAACAGAACT ATTTTGAATT TCAATCGGAA AAACGTTTGC 
    GTCCCACAAG TATTCATGAA CCATGCATTT GATATCCTTA TTTATGTTTG 
    TTCAATTTAC TATTAAGCAA TTAAGTCGAA TTTTATCGAA TCATTTTAAT 
    TTTTACCTTT AACATTTCTG TGATCTTTGA AAGCTTTAAA TTAACGAGGG 
    GAGATATATA CACTAGAGAA AAATAATTGC ATTCCACTGA AAACCTCAAC 
    ATCTTGGGAA ATTTAAACTT AATCAA

AT1G05805.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G43140.2); Has 2662 Blast hits to 2007 proteins in 137 species: Archae - 2; Bacteria - 54; Metazoa - 424; Fungi - 144; Plants - 1472; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Link
InterPro Scan - TAIR