1. Home
  2. Mutant Lines
  3. GT20056

GT20056

CSHL Arabidopsis genetrap mutant lines

Original: GT20056

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20056

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6718568 [Map]; Strand: w
      • AT4G10955.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -13; Region: promoter
      • AT4G10960.1 - [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 5
        Distance: -18; Region: promoter
    Flanking Genome Sequence: GT20056 - 5-prime edge 
    GTTTTTTGGT AAAGGAAAAA GATCCCGATA AATGTTTTTA GATTGCTTTG 
    TGATCTCCAG CGAAAGAGTG CTTGGAGGTT TTTAATATAT AGAATCGGTG 
    ATGGTTACGT GAATAATATG GTTACATTAA ACTTAGGCTT AATTTAAAAA 
    CGCATGTATT ATTACGTTTT CAATTAAGGG AATGGAATAA TGAAAATGCC 
    ACGTGGTGGA ATATGATGTG GTTGTGACTA TACGAGAGTT TCAGTTATCG 
    AAACTACTCT TTTCTTGATG AAGCTGGAAA TGGTAATTAC GGTTTGTTTA 
    TTAACGGAAT CGAAATGAAG C

AT4G10955.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G05260.1); Has 218 Blast hits to 217 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G10960.1

Model type
Protein coding
Short Description
UDP-D-glucose/UDP-D-galactose 4-epimerase 5
Curator Summary
Encodes a protein with UDP-D-glucose 4-epimerase activity.
Computational Description
UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (UGE5); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, guard cell, leaf, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (TAIR:AT4G23920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR