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GT20151

CSHL Arabidopsis genetrap mutant lines

Original: GT20151

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20151

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 145250 [Map]; Strand: c
      • AT2G01275.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -726; Region: promoter
      • AT2G01275.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -962; Region: promoter
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: -426; Region: promoter
    Flanking Genome Sequence: GT20151 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGGTACGAT ACGAAGAAGA 
    AGATTAAGAT TAACGCCGTG AAGTATGATC AGGCGATTGC TGCGTTTTTA 
    ACGCCGAAGG AAGCGTTTTG CCGATTATAA TAAACTTTGT TTTGTGGGCC 
    AAATCCGATT TATTAGTGGG CCGATTAATG GGCTTAAAGC AAATAAAAGC 
    TGAACTGTTG TATTGAATCT AATTATACTA ATTCAATAGT CAATTGTCCA 
    ATAACTGAAA CATTTTATGA TTGACACCTC AGCATACTAC TCTTTTTCTT 
    ACTCTTTCCT CTTTTCTTAC AGAGAATTAA GCAAAATTTT CATTAATTAA 
    TTCATGAATT GTTAAAAAAA AAAAAAATGG GTTTTTATTT ACCTAATTAT 
    TTTTTTTCGA AAACCTTAT

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT20151 - 3-prime edge 
    AAAAAAATTT ATAATATTCG GAAAAGCCCC TCCTCCGGCG TAAAAAACGC 
    CCAAACCCCC GGATCATACT TCAGGGGATA AACCTAAATC TTCTTTTTCG 
    AACCCAACCT GGGGATAAAA ACGGCCGGGA CCGGTCGAAA AAACCCCTCA 
    CCCGTTTTCA TTTCCAAATT

AT2G01275.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G38070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01275.2

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G38070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01280.1

Model type
Protein coding
Short Description
Cyclin/Brf1-like TBP-binding protein
Computational Description
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR