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Mutant Lines
GT20154

GT20154

CSHL Arabidopsis genetrap mutant lines

Original: GT20154

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20154

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 12488103 [Map]; Strand: c
- AT2G29070.2 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
  Distance: 0; Region: intron4 (CDS)
- AT2G29070.1 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
  Distance: 0; Region: intron3 (CDS)

TAAAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGCCATTAA 
TACTGTATCT TCTACTGTTA TATCAATAGT GTTTGGTCTC TGACTCCATC 
TTTTCAGCTT CTTTGCATAT TGAATACCCA ATGCTGTTTC AACTGAGTAA 
TGTTTCTGTT GAGAAGACCT CACATTGTGG TGTACTAGAA TTCACTGCAG 
ACGAAGGCCT AGTTTACTTG CCATATTGGG TATACTTCTC CTTCTCTCGA 
CGAANCTTTC ATTAGTTTCT TACATCTGAT CTTACTTTGT TTTGTTGGCA 
TTACTTACAG ATGATGCAAA ACATGTCTCT TGAAGAGGGA GACGTTATGC 
AAGTTAAGAA TATCAGCTTG GTAAAAGGGA CTTACATCAA GCTGCAGCCT 
CACACTCAAG ATTTCTTGGA TATTTCCAAC CCAAAAGCCA TGTTTGTAGT 
TTTGAAACTG AATAGTTTTC GTTCTATTGA ATATGGTTTT GAAGAATGTG 
TTT

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT20154 - 3-prime edge
```
TTGAATAGAA AATGTTGTTT ATATTGATTA ATGT
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 12488024 [Map]; Strand: c
- AT2G29070.2 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
  Distance: 0; Region: intron3 (CDS)
- AT2G29070.1 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
  Distance: 0; Region: exon3 (5UTR)

GGCTCACCAA GACGATCGAG AGCGGAAGGA GGCATGATAA CTGCAGAGAT 
CACAAGTCTT CTCAGAGATA TATATCATAA AGAAACTATC TATAGAGACT 
AAGGGAAGAG AGTAGTAATT TACTTTTGTC ACCCTTCTCA AGATGTGCCT 
GCATATAAAA TGTCTCATAT TAGAATTTCT TTATAATCTT GATAAATACA 
TCAAAGAGAG CTTAGATACA AAAAATATCA GACCTTGTCA ATGAATGTGA 
CAGGATAACA ACGGTAACAC TGCTCAAAGC TAGAACCATC TCCATCCATA 
TCTCCACTGC CACAAAAACG AAAAAGAAAA ACACTTCAAA ATCTGATCTT 
TATTAGAAAA TTCTGGTTTA CAACGCAACC CATTGAGGCA AATCATCGAA 
TACCTTGTGG GCACAAAATA AAAAGCTAAA GAAAATCAAC TTCAGAATAA 
CATACGATCC TATACAAATT TCAATTCAAA GTATCAAAGC TATAAAGATA 
AGATCTCTGC AGAAAACAAG ATCAAAGGCG ATCATCGAAA AAACTTAAAA 
CAAACTAAAA TCCAAACTTA TGGAACCTTA TTATATGAAT CCAGATAGAT 
TTAATAGCTT AACGAGAACG TTATAGATGA TCAGGACAGT GTTGAACACT 
TTTACTGGGT TAAAATCCAA AAGATGA

AT2G29070.1

Model type: Protein coding
Short Description: Ubiquitin fusion degradation UFD1 family protein
Computational Description: Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 693 Blast hits to 691 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 203; Plants - 125; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G29070.2

Model type: Protein coding
Short Description: Ubiquitin fusion degradation UFD1 family protein
Computational Description: Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR