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GT20181

CSHL Arabidopsis genetrap mutant lines

Original: GT20181

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20181

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12488128 [Map]; Strand: w
      • AT2G29070.2 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
        Distance: 0; Region: intron4 (CDS)
      • AT2G29070.1 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT20181 - 5-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGCCA TTAATACTGT 
    ATCTTCTACT GTTATATCAA TAGTGTTTGG TCTCTGACTC CATCTTTTCA 
    CCTTCTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 617893 [Map]; Strand: c
      • AT2G02340.1 - [+] show detail - phloem protein 2-B8
        Distance: -619; Region: promoter
      • AT2G02350.1 - [+] show detail - SKP1 interacting partner 3
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT20181 - 5-prime edge 
    ACAAAGCGTT TAGTTCTAGA GATTGAAATA CTCTGATAGT CTTTTAGCTC 
    TTTCTTATTT TGAAAGTGTA AGAGCTTCTG GTTAGACAAA GCAAGCGGGA 
    AAAAGTTGGT GTCCAAATCT ATTTTGTAAT CATTTGATGA TCAACACCGA 
    AAAATGTTGC CCATGTTTTT CGTAGATTCG AAAGAGTAGG AGAGGTTGAT 
    GTACAAATTG GCTTCAGATT CACGACAAGT TGAATCCTCG CCTTCTGTCC 
    CCAAAAATCG TCACTCAAAC TTACTTAGTG CTTAGGAAAT TGGATTATAT 
    TTTTGGATTT GGGATGTCCC CTTATAAGCT GAAGGTAGAG TGGTGGATCC 
    GTATGGTCTT AGCCAGGGCC GCCGTATGCT TTGATCCGGC TTCCGATGAG 
    TAGTTTCTAA GGAGGAAACC CGAAGAAAGG TAAGATAGGT GAATGGATGT 
    ATCATTCTAA ATTGTTTATG TGATGATATC CTTTTTAAGT CTTATTTTTC 
    TAGTAATTGT TAGCGTAACG AGTCAAGACT ATATTATAAT AAGAATGACG 
    GGAATGACAT ATTATTCCAC TCTAACACGG TTTAATTCCA CAAAGTCGAC 
    CTTACTTGAC TCTTTATAAT TTGGGTTTGT TCGTTAGAAT TTT

AT2G02340.1

Model type
Protein coding
Short Description
phloem protein 2-B8
Computational Description
phloem protein 2-B8 (PP2-B8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B7 (TAIR:AT2G02320.1); Has 560 Blast hits to 546 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02350.1

Model type
Protein coding
Short Description
SKP1 interacting partner 3
Curator Summary
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Computational Description
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29070.1

Model type
Protein coding
Short Description
Ubiquitin fusion degradation UFD1 family protein
Computational Description
Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 693 Blast hits to 691 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 203; Plants - 125; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29070.2

Model type
Protein coding
Short Description
Ubiquitin fusion degradation UFD1 family protein
Computational Description
Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR