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GT20205

CSHL Arabidopsis genetrap mutant lines

Original: GT20205

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20205

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 615969 [Map]; Strand: w
      • AT2G02330.1 - [+] show detail - pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16...
        Distance: -1377; Region: intergenic
      • AT2G02340.1 - [+] show detail - phloem protein 2-B8
        Distance: 119; Region: intergenic
    Flanking Genome Sequence: GT20205 - 5-prime edge 
    TATAACAATA GGGCAACATC CTCCACTACA AGGACAAAGT TGGAACTTAG 
    CTCATTTAGC TTATCACACA CACAACGGAA TACACTTTTA TCATTTAGAA 
    TGACCTTTTC ACTCCATTGC ATAACCAGTT TAACAACAAT ACCAATTGAT 
    GAGCGGTTGA TTGATAAAAA CCAGCATTCT CGGCACTTAA TTACCGGATA 
    TTCGTAGGAC GGATTTCAAT TCCTTGAATG ATCAAGCCAC GTTTCCAATG 
    ACGCTGCTTA GCCTCTAAAG CAACCATCTC AATTTCATCA TCGTTCAATA 
    ATCCTCCTTC ATTGAAGAAT TCCCCAATCT TTATCTCCAT CCACCCATCT 
    TTTCTCCTCT

AT2G02330.1

Model type
Pseudogene
Computational Description
pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16 P-value to GP|28812128|dbj|BAC64996.1||AP004461 P0443G08.20 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT2G02340.1

Model type
Protein coding
Short Description
phloem protein 2-B8
Computational Description
phloem protein 2-B8 (PP2-B8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B7 (TAIR:AT2G02320.1); Has 560 Blast hits to 546 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR