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Mutant Lines
GT20243

GT20243

CSHL Arabidopsis genetrap mutant lines

Original: GT20243

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20243

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2356376 [Map]; Strand: c
- AT3G07360.2 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (CDS)
- AT3G07360.3 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (CDS)
- AT3G07360.1 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (CDS)

CTATGCAGTA TCACTATCGC ATTCTCTTTG TTTCGCTTGC ACTCGCTCTC 
TCGCGTTATC TTCAGCAACC ATGAAACCCC ACCGAGCTCA CCCAATTCCT 
CCACAGCCTT CCAGTGAGTA ACAAGCATTG CCAATAGCCC AATATAGCTA 
AAAGCTCATC AACGTACAAC CCATTCGAGA TTTTCTTACC TAAAACCCTA 
ACAGCTCCGT CTCTCACAGC TCTACTCCTG TTCTCATGGG CTATACAAAG 
AGTGAAGATC GCTGCAGCTA CGTCTTTGAT AGCTAATGGA TTCCCTTCTT 
CTAGGAGATC GATAAGCGGT TTCAGGATTC CGGACTTCCC TATAAGTACT 
TTGTTTGAAT CGAGAGCTGA CAGAGTGAAG ATCGCTGCAG CTGCATTGCT 
TCTCGTGGCG ACTGTTCCAC GCCTCAATGC ATCGATAAGG AGAGGAATCA 
CATTAGGATT TTCGCAGACG AGCTTCTTGT TGCTGACATC ATGTATTGAT 
ATGTTCAACA ATGTTGTAAC CACATCTT

AT3G07360.1

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description: plant U-box 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 3234 Blast hits to 3002 proteins in 224 species: Archae - 0; Bacteria - 16; Metazoa - 312; Fungi - 206; Plants - 2395; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G07360.2

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description: plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G07360.3

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description: plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR