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GT20276

CSHL Arabidopsis genetrap mutant lines

Original: GT20276

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20276

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26315129 [Map]; Strand: w
      • AT5G65770.3 - [+] show detail - little nuclei4
        Distance: 0; Region: exon6 (CDS)
      • AT5G65780.2 - [+] show detail - branched-chain amino acid aminotransferase 5 / branched-chain amino acid tran...
        Distance: 0; Region: exon6 (CDS)
      • AT5G65770.1 - [+] show detail - little nuclei4
        Distance: 0; Region: exon6 (CDS)
      • AT5G65770.2 - [+] show detail - little nuclei4
        Distance: 0; Region: exon6 (CDS)
      • AT5G65780.1 - [+] show detail - branched-chain amino acid aminotransferase 5 / branched-chain amino acid tran...
        Distance: -261; Region: promoter
    Flanking Genome Sequence: GT20276 - 5-prime edge 
    GAGATGACAC TACGCGAACC AAGCAATAAC AAAAAGAGGA AACATGATGT 
    TACCCAAAAA TATTCTGATG AAGCTGATAC CCAGAGGTAA AGTCTGATCA 
    TTCAATATTA AATTTTACAC ATTTGTTTTC TTGTTTTTAC ATCAATATTA 
    AAATCTGAAT CTTACATCTT CTTTTTCTCA GTGTCATATC AAGCCCGCAA 
    AATGTGCCTG AGGACAAACA TGAACTACCA TCAAGCCAAA CCCAGACGCC 
    TAGTGGTATG GTAGTCATCA GTGAAACCGT TAAGATCACA AGAGTAACGT 
    GTGAGACAGA GGTGACCAAC AAAGTCACAA CCCTTGACTG CTCAGAAAGT 
    CCTTCGGAAG CAGGGAGAAA GATGGGAGAG GAGACAGAAG ATGGTGATTG 
    CAATCAGGTA GTTTTCATGA ACTCTTTAAA GAAGAATTGC CTGCAAACTT 
    TACAACAGAT GAATAATACC CTTTGGCTAT TTCTGTAGAC TGGGATAAAC 
    GCGTCTGAAA CAGTGATTCA TAATGAAGCT GCAACAGAAG ATATATGCAC 
    ATAAGGTACG TCTCAGTCTT CACCAGATAA CTAACCCCCA CATATGTTGT 
    C

AT5G65770.1

Model type
Protein coding
Short Description
little nuclei4
Computational Description
LITTLE NUCLEI4 (LINC4); LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 212892 Blast hits to 104310 proteins in 3685 species: Archae - 2813; Bacteria - 44601; Metazoa - 88597; Fungi - 16519; Plants - 11430; Viruses - 898; Other Eukaryotes - 48034 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65770.2

Model type
Protein coding
Short Description
little nuclei4
Computational Description
LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 215167 Blast hits to 102614 proteins in 3709 species: Archae - 2940; Bacteria - 43360; Metazoa - 90724; Fungi - 17442; Plants - 11239; Viruses - 934; Other Eukaryotes - 48528 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65770.3

Model type
Protein coding
Short Description
little nuclei4
Computational Description
LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2).
Link
InterPro Scan - TAIR

AT5G65780.1

Model type
Protein coding
Short Description
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
Curator Summary
encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant
Computational Description
ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain aminotransferase 3 (TAIR:AT3G49680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65780.2

Model type
Protein coding
Short Description
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
Curator Summary
encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant
Computational Description
ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei4 (TAIR:AT5G65770.3).
Link
InterPro Scan - TAIR