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GT20380

CSHL Arabidopsis genetrap mutant lines

Original: GT20380

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20380

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3238936 [Map]; Strand: w
      • AT3G10410.1 - [+] show detail - SERINE CARBOXYPEPTIDASE-LIKE 49
        Distance: -823; Region: promoter
      • AT3G10415.1 - [+] show detail - pre-tRNA
        Distance: -534; Region: promoter
      • AT3G10420.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -244; Region: promoter
      • AT3G10420.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -244; Region: promoter
    Flanking Genome Sequence: GT20380 - 5-prime edge 
    TTTCTCCCTG ATAAACGGTA GCTCCATAGT CAGACACGTG TCAACAAGAT 
    TGTCCAACTC TCCACGTGGC GCCACGTGAA CCAGTTGCTT GAACGGCTAT 
    GTTATCATCT TTCCCTCTAC AATGGACCCT ACTTTGTTCT ATACAGATGC 
    AGTTTCTGTG TAATTAGATG CTTTGATCCT TTGGAATCTT CCACTAGTTT 
    CAGTCTTCAC GCATCATCAT ATTCCAAAAA AATGAAATGA AAAAAGAACT 
    AATACTCAAA ACGTTGTCGT TTCGTTGTGC TTCATAGCTC TTCTCCACCT 
    CAGCTTTTCC GTTTTAGCTT CTTCATCTC

AT3G10410.1

Model type
Protein coding
Short Description
SERINE CARBOXYPEPTIDASE-LIKE 49
Computational Description
SERINE CARBOXYPEPTIDASE-LIKE 49 (SCPL49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 3569 Blast hits to 3439 proteins in 342 species: Archae - 0; Bacteria - 147; Metazoa - 678; Fungi - 883; Plants - 1454; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10415.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR

AT3G10420.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 1488 Blast hits to 1479 proteins in 630 species: Archae - 20; Bacteria - 1182; Metazoa - 12; Fungi - 5; Plants - 115; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10420.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 1500 Blast hits to 1489 proteins in 625 species: Archae - 20; Bacteria - 1170; Metazoa - 12; Fungi - 5; Plants - 122; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR