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GT20434

CSHL Arabidopsis genetrap mutant lines

Original: GT20434

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20434

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23149187 [Map]; Strand: c
      • AT5G57130.1 - [+] show detail - Clp amino terminal domain-containing protein
        Distance: 0; Region: exon4 (CDS)
      • AT5G57140.1 - [+] show detail - purple acid phosphatase 28
        Distance: -693; Region: promoter
    Flanking Genome Sequence: GT20434 - 5-prime edge 
    TTTTAACCGT TAGTAACCCC GTTTGAAAAA CCTCCTTTAA CCATCTTTCA 
    AACGCACCGT TTTGAATCCC GTAAAGCTCC TCTACTAACT TGTCCTCCAC 
    GCTAAACCTA ACTCCGCCTC CTTCTTCTCT CTCGAGGAAA GTCTCCCTGA 
    AAGCTGCTGT TATCATACCT TTTTCGATAC CTGGTTCACA TGACCTGTTT 
    AGGACAAACC GGTTTTGAAT CCGGTTTATA AAGTTGCTTG AAGAGGAGAA 
    CTCTGTCTCC TCCTCTCCTG TTAAA

AT5G57130.1

Model type
Protein coding
Short Description
Clp amino terminal domain-containing protein
Computational Description
Clp amino terminal domain-containing protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G29920.1); Has 283 Blast hits to 240 proteins in 33 species: Archae - 2; Bacteria - 10; Metazoa - 3; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57140.1

Model type
Protein coding
Short Description
purple acid phosphatase 28
Computational Description
purple acid phosphatase 28 (PAP28); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 29 (TAIR:AT5G63140.1); Has 678 Blast hits to 661 proteins in 227 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 205; Plants - 115; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR