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GT20436

CSHL Arabidopsis genetrap mutant lines

Original: GT20436

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20436

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4098204 [Map]; Strand: w
      • AT3G12890.1 - [+] show detail - activator of spomin::LUC2
        Distance: -995; Region: promoter
    Flanking Genome Sequence: GT20436 - 5-prime edge 
    AACTCGTGGT GATTCAGTGG TTGAAATTTT TTTCATACGG TTTAAATGGC 
    AAAATTCTTC ATAGATCCCG GAGATTATAC GGAACTTGGT TTATAATTCC 
    CGGCTCGAAA GTTTAAGCAT TGGCGACCAG AGTTTAGATA TCAAATCTTG 
    TAAAATACGC ATGCATGGTT GTCATGCAAA CGTAGTATTA TGATGTAACC 
    AGTGAATCTA AATTGGACTG AGGAGGTAGG GGGTAAATAG ACACACAAAT 
    CTAAGTTCAT ATACATTTTT GCGTAAATAT TTATTGGTGG ATTCAAGTCA 
    TGGGGGCTGT TTTGTACTTG G

AT3G12890.1

Model type
Protein coding
Short Description
activator of spomin::LUC2
Curator Summary
Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.
Computational Description
activator of spomin::LUC2 (ASML2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1405 Blast hits to 1405 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR