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GT20510

CSHL Arabidopsis genetrap mutant lines

Original: GT20510

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20510

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4037186 [Map]; Strand: w
      • AT3G12700.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G12700.2 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20510 - 5-prime edge 
    CTTTCTCCAG GCGTTTCATC AATGTATATA AATACTCTGT TTTGGAAACA 
    GAACCCAACA GGGGACAAAA AAAATCAAGA AGAAAAAATG CAGAAGACAT 
    TGCTCTCATG TCTCATCACG ACGCTCCTCC TAATCACCGT CGCAGATTCC 
    ATGAAAGACA CCTCGGTGCG GCTAAAATTA GCGCACAGGG ACACTCTCTT 
    GCCGAAACCT CTCAGCCGCA TTGAGGACAT TATCGGCGCC GACCAGAAGC 
    GTCATAGTTT GATATCTCGG AAGCGTAACT CCACAGTAGG AGTGAAAATG 
    GATTTGGGAT CAGGGATTGA TTACGGGAGC GG

AT3G12700.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G25700.1); Has 3537 Blast hits to 3526 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 933; Fungi - 442; Plants - 1963; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12700.2

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G31450.1); Has 1235 Blast hits to 1233 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 149; Plants - 889; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR