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GT20513

CSHL Arabidopsis genetrap mutant lines

Original: GT20513

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20513

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9166196 [Map]; Strand: w
      • AT1G26520.1 - [+] show detail - Cobalamin biosynthesis CobW-like protein
        Distance: -296; Region: promoter
      • AT1G26530.1 - [+] show detail - PIN domain-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT20513 - 5-prime edge 
    CTTCGTGATT TTGGATCTTC TTAGAACTTT GGATTTTGAT TTGTGATTTT 
    GGTGGTGTTT TGTATCAGTC CAAGTGTTCC TTCAGGGCTT TTCTTCTCTC 
    TCGA

AT1G26520.1

Model type
Protein coding
Short Description
Cobalamin biosynthesis CobW-like protein
Computational Description
Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 8517 Blast hits to 8427 proteins in 1716 species: Archae - 88; Bacteria - 6047; Metazoa - 151; Fungi - 280; Plants - 232; Viruses - 0; Other Eukaryotes - 1719 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26530.1

Model type
Protein coding
Short Description
PIN domain-like family protein
Computational Description
PIN domain-like family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT2G46230.1); Has 517 Blast hits to 517 proteins in 211 species: Archae - 4; Bacteria - 0; Metazoa - 206; Fungi - 155; Plants - 64; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR