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GT20823

CSHL Arabidopsis genetrap mutant lines

Original: GT20823

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20823

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22188524 [Map]; Strand: w
      • AT3G60080.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20823 - 5-prime edge 
    CACTTTCTCC CTGGCTAGGA CTGTTTCAGG TCTTGGAATT GGTATGAGAA 
    GAAGAGAAGA GATTGAAGCA GACAGAAGCA ACGTCACAAC GACGCCTTTG 
    TAAGAACGAT TTCGAAATTC AAATATGAGT TTTTTTTTGG TTGGCTCCAA 
    ATCCCCACCC CCCGGTTAAT TTTACCGACC GGCGTTTTAA CCGATAATGG 
    ATTATAGTTC CAAAACCGAA AGTTTTTTTT TTTTCCGGGG CCAAGGGTTT 
    TCCCTTTTAA AAAAAGGGGG GAAAACCCCT TGCTTTTGGG GGGGGGCCCC 
    CTTCCAAACC CATATGGGGG AAAAAAACCC AAGGGGGAAG GGTTGGCCCC 
    CCTTTTTCCC CCCCCCC

AT3G60080.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44330.1); Has 9920 Blast hits to 9845 proteins in 282 species: Archae - 0; Bacteria - 98; Metazoa - 2725; Fungi - 927; Plants - 4887; Viruses - 7; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR