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GT20837

CSHL Arabidopsis genetrap mutant lines

Original: GT20837

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20837

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30238201 [Map]; Strand: w
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -430; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -485; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -473; Region: promoter
    Flanking Genome Sequence: GT20837 - 5-prime edge 
    ACTTAATGCC CTGAAAAACC TAAACCTTGC AAGGGGAGAA AACATCCTAT 
    TTCTTCTGAA ATATATCGAA TGCTTGGCCA TATCATTAAT GTCAT

AT1G80420.1

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.2

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.3

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.4

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357).
Link
InterPro Scan - TAIR