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GT20844

CSHL Arabidopsis genetrap mutant lines

Original: GT20844

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20844

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22378558 [Map]; Strand: c
      • AT3G60540.2 - [+] show detail - Preprotein translocase Sec, Sec61-beta subunit protein
        Distance: -2693; Region: intergenic
      • AT3G60550.1 - [+] show detail - cyclin p3;2
        Distance: -1247; Region: intergenic
    Flanking Genome Sequence: GT20844 - 5-prime edge 
    CCTACTTTCT CTCTCTCGAC AGTGCGGTTA CTTCATCATG TGAAAACTTG 
    TTTTTCATGG TTATAATCTA AAATTTTATG GTTTTTCTCT TGTTATGTGA 
    ATAACAGATT TTGGTAATGC AACAAAGGTA CAAGTCAACA TCGGTCGCAG 
    AAGAGAGAGT GGTCTGAAAT CCCACCGTCT AAATAGGTAT AATATACTGG 
    TTACCATCAA GAATACATTG CATGTGCAAC GCATATATTG CCTTGAGACA 
    TATCAACTTA TCAAGTACTG TCGTCTTTAT TGAAATACCT AGTTTATGTA 
    GTGATGTAGA AACTTTTTTT TTTGTCACTA AACTAAATTA ATTTCCTTAA 
    ATTGGAGGGG AACCCAG

AT3G60540.2

Model type
Protein coding
Short Description
Preprotein translocase Sec, Sec61-beta subunit protein
Computational Description
Preprotein translocase Sec, Sec61-beta subunit protein; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT2G45070.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60550.1

Model type
Protein coding
Short Description
cyclin p3;2
Computational Description
cyclin p3;2 (CYCP3;2); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922); BEST Arabidopsis thaliana protein match is: cyclin p3;1 (TAIR:AT2G45080.1); Has 1360 Blast hits to 1354 proteins in 218 species: Archae - 0; Bacteria - 18; Metazoa - 236; Fungi - 630; Plants - 217; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).
Link
InterPro Scan - TAIR