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GT20854

CSHL Arabidopsis genetrap mutant lines

Original: GT20854

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20854

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12263775 [Map]; Strand: w
      • AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -815; Region: promoter
    Flanking Genome Sequence: GT20854 - 5-prime edge 
    CCATGTGCAT GTATATACGT AATAAGCTAA GATATTTTTA ACCGTTACAG 
    AATTTGACTA ACGATACTGA ACGATTAGGG TAAGTATTTT TTTGACATGT 
    ATAAATTAAT ACTTATTAAC GGCATCATTA TATGTTATTA TGTTAAGTTC 
    CGAAAAGAGG CAAGGTTCAA TTAGGTGGGT GGGAGTGACT CAGTAAACCA 
    TTGTGGCTCT AGTTGTATAT AACTTTTTCT TCACTATATA ATTTCACTAA 
    AATTTTGTTG ATTTATGACA TGGCTATACA ATTTTGTTGA TTTATCTAAG 
    AGTTGTATAG CCATGTGATA TATATACATT TCTAAACAAG GTTACATTAT 
    TTAGTTTTGA AATTTATTTA TGTGATATAC ACTAACAAAC ATTTTCTTTA 
    TTTGATGACA TTCTCACATA ATTTAATAGA TGAGGATAAC AAAATCTTCA 
    ACGCAATTGC TCAAATGGGG GAAGTCTCAT CCTACAATGC TGGTTTCAAA 
    GTCAAAGAAG TTAGCGGTTG CATTTCCAAT TTTTTTTGTT GCTCAATCAA 
    TTGAAACTTT ACCCATAGCA TTTCCTT

AT4G23500.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G61490.3); Has 4172 Blast hits to 4159 proteins in 509 species: Archae - 6; Bacteria - 1479; Metazoa - 14; Fungi - 1128; Plants - 1399; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link
InterPro Scan - TAIR